Variant report
| Variant | rs12661109 |
|---|---|
| Chromosome Location | chr6:37987001-37987002 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:37963000-37995600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr6:37969200-37987800 | Weak transcription | Fetal Kidney | kidney |
| 3 | chr6:37976600-37988400 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
| 4 | chr6:37976800-37987800 | Weak transcription | Skeletal Muscle Male | skeletal muscle |
| 5 | chr6:37978200-37987600 | Weak transcription | Pancreas | Pancrea |
| 6 | chr6:37979400-37989000 | Weak transcription | Primary T cells from cord blood | blood |
| 7 | chr6:37980600-37987800 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
| 8 | chr6:37981400-37989000 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 9 | chr6:37981400-37989000 | Weak transcription | Primary T helper cells PMA-I stimulated | -- |
| 10 | chr6:37981400-37990400 | Weak transcription | Fetal Brain Female | brain |
| 11 | chr6:37982600-37989400 | Weak transcription | Psoas Muscle | Psoas |
| 12 | chr6:37983000-37994600 | Weak transcription | Primary T helper memory cells from peripheral blood 2 | blood |
| 13 | chr6:37983400-37988400 | Weak transcription | Brain Hippocampus Middle | brain |
| 14 | chr6:37983400-37994600 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
| 15 | chr6:37983600-37987600 | Weak transcription | Rectal Smooth Muscle | rectum |
| 16 | chr6:37983600-37988200 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 17 | chr6:37983800-37988400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 18 | chr6:37984200-37988400 | Weak transcription | Brain Substantia Nigra | brain |
| 19 | chr6:37984200-37989400 | Enhancers | Liver | Liver |
| 20 | chr6:37985000-37989000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 21 | chr6:37985000-37995600 | Weak transcription | Primary hematopoietic stem cells | blood |
| 22 | chr6:37985000-38002400 | Weak transcription | Primary B cells from cord blood | blood |
| 23 | chr6:37985000-38030200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 24 | chr6:37985200-37987400 | Weak transcription | Colon Smooth Muscle | Colon |
| 25 | chr6:37985200-37987600 | Weak transcription | Gastric | stomach |
| 26 | chr6:37985200-37987600 | Weak transcription | Left Ventricle | heart |
| 27 | chr6:37985200-37987600 | Weak transcription | Ovary | ovary |
| 28 | chr6:37985200-37987600 | Weak transcription | Right Atrium | heart |
| 29 | chr6:37985200-37987800 | Weak transcription | Stomach Smooth Muscle | stomach |
| 30 | chr6:37985200-37988400 | Weak transcription | Brain Anterior Caudate | brain |
| 31 | chr6:37985200-37989000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 32 | chr6:37985200-37991400 | Weak transcription | GM12878-XiMat | blood |
| 33 | chr6:37985200-37995000 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
| 34 | chr6:37985200-37995400 | Weak transcription | A549 | lung |
| 35 | chr6:37985200-37995600 | Weak transcription | Brain Angular Gyrus | brain |
| 36 | chr6:37985200-38001400 | Weak transcription | Small Intestine | intestine |
| 37 | chr6:37985400-37987800 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
| 38 | chr6:37985400-37989000 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
| 39 | chr6:37985400-37992200 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 40 | chr6:37986200-37987200 | Enhancers | HepG2 | liver |
| 41 | chr6:37986800-37987400 | Weak transcription | Right Ventricle | heart |
| 42 | chr6:37987000-37987600 | Weak transcription | Lung | lung |
| 43 | chr6:37987000-37993600 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
