Variant report

Variant	rs34254045
Chromosome Location	chr6:37880743-37880744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37873838..37876151-chr6:37878592..37881455,2	K562	blood:
2	chr6:37867249..37869024-chr6:37880407..37882730,2	K562	blood:

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10428769	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10485030	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10498739	0.82[ASN][1000 genomes]
rs10498740	0.82[ASN][1000 genomes]
rs10947702	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10947704	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11751781	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11751927	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11751962	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11752521	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752809	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11752814	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11752863	0.82[ASN][1000 genomes]
rs11753300	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11755095	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11755629	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11756713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11757161	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11759458	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11759496	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11759826	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11967129	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11969988	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12660919	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12660922	0.82[ASN][1000 genomes]
rs12661378	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12661702	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12662305	0.81[ASN][1000 genomes]
rs12662426	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12664091	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12664768	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13190751	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13195545	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13205214	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13205311	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13206035	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16890185	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16890247	0.83[ASN][1000 genomes]
rs16890267	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16890301	0.89[ASN][1000 genomes]
rs2025431	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2103950	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2273441	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2274091	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2395689	0.97[ASN][1000 genomes]
rs2645111	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2645125	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2645130	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2842510	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2842511	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2842512	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2842513	0.86[AFR][1000 genomes]
rs2842521	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34450348	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35051126	0.96[ASN][1000 genomes]
rs35122358	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35216205	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35772972	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35849984	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3844314	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3852216	0.83[ASN][1000 genomes]
rs55679841	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55996712	0.81[AMR][1000 genomes]
rs56023538	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56129320	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56177150	0.81[AMR][1000 genomes]
rs57276677	0.82[ASN][1000 genomes]
rs57402213	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57911756	0.82[ASN][1000 genomes]
rs58333612	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58611435	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59036086	0.83[ASN][1000 genomes]
rs59103990	0.82[ASN][1000 genomes]
rs61411293	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6458032	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6903743	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6906289	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6908106	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6910715	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6911716	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6936260	0.83[AMR][1000 genomes]
rs71569402	0.86[ASN][1000 genomes]
rs73419440	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73421436	0.82[ASN][1000 genomes]
rs73421439	0.82[ASN][1000 genomes]
rs7742226	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7745796	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7746266	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7747996	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7748312	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7759145	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7759792	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7761561	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7762052	0.81[AMR][1000 genomes]
rs7764130	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7773419	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7775794	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv970036	chr6:37876765-37894762	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37850600-37890400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:37851000-37884600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:37857600-37886000	Weak transcription	Esophagus	oesophagus
4	chr6:37857600-37895400	Weak transcription	Pancreas	Pancrea
5	chr6:37862400-37884000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:37862600-37882000	Weak transcription	Fetal Intestine Small	intestine
7	chr6:37864600-37880800	Weak transcription	NHDF-Ad	bronchial
8	chr6:37866000-37885600	Weak transcription	Hela-S3	cervix
9	chr6:37872000-37887600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:37872000-37888200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:37872000-37890400	Weak transcription	Small Intestine	intestine
12	chr6:37872200-37883000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:37872200-37884000	Weak transcription	Adipose Nuclei	Adipose
14	chr6:37872200-37884600	Weak transcription	Fetal Kidney	kidney
15	chr6:37872400-37883000	Weak transcription	Brain Substantia Nigra	brain
16	chr6:37872600-37885200	Weak transcription	HepG2	liver
17	chr6:37872600-37896400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr6:37872800-37880800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:37873000-37882600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:37873200-37887400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:37873400-37929200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:37874000-37888400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:37874200-37884600	Weak transcription	A549	lung
24	chr6:37874400-37880800	Weak transcription	Osteobl	bone
25	chr6:37874400-37887600	Weak transcription	Spleen	Spleen
26	chr6:37874400-37888200	Weak transcription	Primary B cells from peripheral blood	blood
27	chr6:37874600-37903800	Weak transcription	Primary hematopoietic stem cells	blood
28	chr6:37874800-37881600	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr6:37876000-37880800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr6:37876600-37903200	Weak transcription	Dnd41	blood
31	chr6:37877400-37880800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:37877600-37882800	Weak transcription	Liver	Liver
33	chr6:37877600-37884000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr6:37877800-37881400	Enhancers	Primary T cells from cord blood	blood
35	chr6:37877800-37881800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:37878000-37883200	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr6:37878000-37883200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:37878200-37883400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:37878200-37883800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:37878800-37881200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr6:37878800-37900400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr6:37879600-37882600	Weak transcription	Fetal Heart	heart
43	chr6:37879600-37889600	Weak transcription	K562	blood
44	chr6:37879800-37880800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr6:37879800-37881200	Weak transcription	HSMM	muscle
46	chr6:37879800-37882600	Weak transcription	Brain Anterior Caudate	brain
47	chr6:37879800-37886200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:37879800-37887400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr6:37879800-37887600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr6:37879800-37890400	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links