Variant report

Variant	rs35122358
Chromosome Location	chr6:37810044-37810045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37786218..37789044-chr6:37808476..37810682,2	MCF-7	breast:
2	chr6:37785007..37788077-chr6:37806968..37810692,5	K562	blood:
3	chr6:37797940..37799807-chr6:37808764..37811623,2	MCF-7	breast:
4	chr6:37785007..37788077-chr6:37806355..37810692,7	K562	blood:
5	chr6:37802711..37804366-chr6:37809800..37811727,2	K562	blood:

Variant related genes	Relation type
ENSG00000225945	Chromatin interaction
ENSG00000156639	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10428769	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10485030	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10947702	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947704	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751781	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11751927	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11751962	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752521	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11752809	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11752814	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11753300	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11755095	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11755629	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11756713	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11757161	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759458	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11759496	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11759826	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11967129	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969988	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12660919	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12661378	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661702	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662426	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664091	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12664768	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13190751	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13195545	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13205214	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13205311	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206035	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16890177	0.82[ASN][1000 genomes]
rs16890181	0.82[ASN][1000 genomes]
rs16890185	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16890267	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2025431	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2064795	0.82[ASN][1000 genomes]
rs2103950	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2273441	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2274090	0.82[ASN][1000 genomes]
rs2274091	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395689	0.82[ASN][1000 genomes]
rs2645111	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2645125	0.85[AMR][1000 genomes]
rs2645130	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2842510	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2842511	0.83[ASN][1000 genomes]
rs2842512	0.83[ASN][1000 genomes]
rs2842521	0.85[AMR][1000 genomes]
rs34254045	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34450348	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35051126	0.81[ASN][1000 genomes]
rs35216205	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35772972	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35849984	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3844314	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55679841	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55996712	0.81[AMR][1000 genomes]
rs56023538	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56129320	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56177150	0.81[AMR][1000 genomes]
rs57198506	0.82[ASN][1000 genomes]
rs57402213	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58333612	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58611435	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58692659	0.80[ASN][1000 genomes]
rs59649654	0.82[ASN][1000 genomes]
rs60141491	0.82[ASN][1000 genomes]
rs60284537	0.82[ASN][1000 genomes]
rs61332486	0.80[ASN][1000 genomes]
rs61411293	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61466900	0.82[ASN][1000 genomes]
rs6458032	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6903743	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6906289	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6908106	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6910715	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6911716	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6936260	0.80[AFR][1000 genomes]
rs73419440	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7742226	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745796	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7746266	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7747996	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7748312	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7759145	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759792	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7761561	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762052	0.81[AMR][1000 genomes]
rs7764130	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7773419	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775794	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37791200-37820000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:37791400-37810200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:37791400-37813400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:37791400-37816000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:37793800-37813600	Weak transcription	NH-A	brain
6	chr6:37794000-37819800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:37795000-37813800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:37795000-37825600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:37795800-37813400	Weak transcription	HSMMtube	muscle
10	chr6:37796000-37812800	Weak transcription	Colonic Mucosa	Colon
11	chr6:37796000-37813200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:37796000-37813800	Weak transcription	NHDF-Ad	bronchial
13	chr6:37796000-37815600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:37796000-37828800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:37796000-37830600	Weak transcription	Hela-S3	cervix
16	chr6:37796200-37811400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:37796200-37813200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:37798400-37812800	Weak transcription	HSMM	muscle
19	chr6:37798400-37815200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr6:37798400-37815800	Weak transcription	Fetal Heart	heart
21	chr6:37799400-37817400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:37799600-37811200	Weak transcription	Brain Substantia Nigra	brain
23	chr6:37799600-37811800	Weak transcription	Placenta	Placenta
24	chr6:37799600-37812800	Weak transcription	NHEK	skin
25	chr6:37799600-37813400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr6:37799600-37825800	Weak transcription	Esophagus	oesophagus
27	chr6:37799800-37825400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr6:37800200-37812800	Weak transcription	Gastric	stomach
29	chr6:37800200-37813400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr6:37800200-37830200	Weak transcription	Ovary	ovary
31	chr6:37800200-37836200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:37800400-37813200	Weak transcription	Colon Smooth Muscle	Colon
33	chr6:37801000-37811400	Weak transcription	Thymus	Thymus
34	chr6:37801000-37811600	Weak transcription	Fetal Thymus	thymus
35	chr6:37801000-37811800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:37801000-37813600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:37801000-37817600	Weak transcription	Spleen	Spleen
38	chr6:37801000-37818600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:37801200-37833400	Weak transcription	Fetal Muscle Leg	muscle
40	chr6:37802200-37812800	Weak transcription	A549	lung
41	chr6:37802400-37811600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:37802400-37811600	Weak transcription	Fetal Muscle Trunk	muscle
43	chr6:37802400-37812800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:37802400-37813200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr6:37802400-37813200	Weak transcription	Fetal Kidney	kidney
46	chr6:37802400-37818400	Weak transcription	Primary B cells from cord blood	blood
47	chr6:37802600-37812200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:37802600-37818400	Weak transcription	Fetal Lung	lung
49	chr6:37802600-37834400	Weak transcription	Duodenum Mucosa	Duodenum
50	chr6:37803000-37823800	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links