Variant report

Variant	rs6908106
Chromosome Location	chr6:37785490-37785491
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:37785428-37785747	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:37764739..37766769-chr6:37785115..37786882,2	K562	blood:
2	chr6:37772786..37776209-chr6:37782926..37786197,4	K562	blood:
3	chr6:37757989..37761183-chr6:37784912..37786796,3	MCF-7	breast:

Variant related genes	Relation type
ZFAND3	TF binding region

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10428769	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10485030	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10947702	0.89[CEU][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10947704	1.00[CEU][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11751781	0.89[CEU][hapmap]
rs11751962	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11752521	1.00[CEU][hapmap];0.93[YRI][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11752809	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752814	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753300	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755095	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11755629	1.00[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11756713	1.00[CEU][hapmap];0.97[YRI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11757161	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11759458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759496	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11759826	0.89[CEU][hapmap]
rs11964613	1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[ASN][1000 genomes]
rs11964671	1.00[JPT][hapmap];0.80[YRI][hapmap];0.87[ASN][1000 genomes]
rs11967129	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11968604	0.87[ASN][1000 genomes]
rs11969988	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11970017	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11970145	0.87[ASN][1000 genomes]
rs12660919	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12661378	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12661702	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12662426	1.00[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12664091	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12664768	1.00[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13190751	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13195545	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13198459	1.00[JPT][hapmap]
rs13200310	0.91[ASN][1000 genomes]
rs13203867	1.00[JPT][hapmap]
rs13205214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13205311	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13206035	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs13207526	1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[ASN][1000 genomes]
rs13210967	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs13211881	0.87[ASN][1000 genomes]
rs13218158	0.87[ASN][1000 genomes]
rs13219500	1.00[JPT][hapmap]
rs16890185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16890194	1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[ASN][1000 genomes]
rs2025431	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2103950	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2273441	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs2274091	1.00[CEU][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2453882	1.00[JPT][hapmap];0.81[YRI][hapmap]
rs2645096	1.00[JPT][hapmap]
rs2645098	1.00[JPT][hapmap]
rs2645104	1.00[JPT][hapmap];0.82[YRI][hapmap]
rs2645111	0.80[AMR][1000 genomes]
rs2645126	1.00[JPT][hapmap];0.81[YRI][hapmap]
rs2645130	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2842499	1.00[JPT][hapmap]
rs2842510	1.00[CEU][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2842511	0.97[YRI][hapmap]
rs2842514	1.00[JPT][hapmap];0.81[YRI][hapmap]
rs2842516	1.00[JPT][hapmap]
rs2842521	0.94[CEU][hapmap];0.90[YRI][hapmap]
rs2842524	1.00[JPT][hapmap];0.80[YRI][hapmap]
rs34011349	0.87[ASN][1000 genomes]
rs34254045	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34611895	0.87[ASN][1000 genomes]
rs34745343	0.87[ASN][1000 genomes]
rs35122358	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35216205	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35248825	0.87[ASN][1000 genomes]
rs35379375	0.83[ASN][1000 genomes]
rs35609407	0.87[ASN][1000 genomes]
rs35849984	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35955196	0.83[ASN][1000 genomes]
rs36069529	0.83[ASN][1000 genomes]
rs3844314	1.00[CEU][hapmap];0.97[YRI][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4394213	1.00[JPT][hapmap]
rs4711518	0.82[JPT][hapmap];0.82[YRI][hapmap]
rs55679841	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55996712	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56129320	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56177150	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56391784	0.87[ASN][1000 genomes]
rs57402213	0.81[EUR][1000 genomes]
rs58333612	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58611435	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61411293	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6458032	1.00[CEU][hapmap];0.93[YRI][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6458037	1.00[JPT][hapmap]
rs6903743	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6906289	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6908761	1.00[JPT][hapmap]
rs6910715	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6910837	1.00[JPT][hapmap];0.81[YRI][hapmap]
rs6911481	0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs6911716	1.00[CEU][hapmap];0.93[YRI][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6912250	0.87[ASN][1000 genomes]
rs6916535	1.00[JPT][hapmap]
rs6918802	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6919884	1.00[JPT][hapmap]
rs6923132	1.00[JPT][hapmap]
rs6923254	1.00[JPT][hapmap]
rs6925563	1.00[JPT][hapmap]
rs6933547	0.82[YRI][hapmap]
rs6936260	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6940491	1.00[JPT][hapmap]
rs71569394	0.87[ASN][1000 genomes]
rs73419440	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7742226	1.00[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7742379	0.83[ASN][1000 genomes]
rs7745796	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7746266	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7747996	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7748312	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs7750445	0.82[JPT][hapmap]
rs7759145	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7759792	0.89[CEU][hapmap]
rs7760770	0.87[ASN][1000 genomes]
rs7761561	1.00[CEU][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7762052	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7764130	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7773419	1.00[CEU][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7775794	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7776025	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37776400-37785800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:37777200-37786000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:37781400-37785800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:37781400-37785800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:37783800-37785800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:37783800-37785800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:37784400-37785800	Enhancers	Liver	Liver
8	chr6:37784400-37785800	Enhancers	Fetal Lung	lung
9	chr6:37784400-37785800	Enhancers	K562	blood
10	chr6:37784600-37785600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:37784600-37785800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:37784600-37785800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:37784600-37786000	Flanking Active TSS	HepG2	liver
14	chr6:37784800-37785800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:37784800-37785800	Enhancers	Primary T cells from cord blood	blood
16	chr6:37784800-37785800	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr6:37784800-37785800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:37784800-37786000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr6:37784800-37786000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:37784800-37786000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr6:37784800-37789000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:37785000-37785600	Weak transcription	NH-A	brain
23	chr6:37785000-37785800	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr6:37785000-37785800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:37785000-37785800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr6:37785000-37785800	Weak transcription	Fetal Kidney	kidney
27	chr6:37785000-37786000	Weak transcription	Stomach Mucosa	stomach
28	chr6:37785200-37785600	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr6:37785200-37785600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr6:37785200-37785600	Enhancers	Dnd41	blood
31	chr6:37785200-37785600	Weak transcription	HMEC	breast
32	chr6:37785200-37785600	Weak transcription	HSMMtube	muscle
33	chr6:37785200-37785800	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr6:37785200-37785800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:37785400-37785600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:37785400-37785600	Enhancers	Psoas Muscle	Psoas
37	chr6:37785400-37785600	Weak transcription	NHEK	skin
38	chr6:37785400-37785800	Enhancers	Fetal Brain Male	brain
39	chr6:37785400-37785800	Enhancers	Fetal Muscle Trunk	muscle
40	chr6:37785400-37785800	Enhancers	GM12878-XiMat	blood
41	chr6:37785400-37786000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:37785400-37786000	Enhancers	Primary T cells fromperipheralblood	blood
43	chr6:37785400-37786000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr6:37785400-37789200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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