Variant report

Variant	rs7742379
Chromosome Location	chr6:37837460-37837461
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37835497..37837699-chr6:37850167..37852091,2	MCF-7	breast:
2	chr6:37835143..37837500-chr6:37850696..37852776,2	MCF-7	breast:
3	chr6:37834905..37837847-chr6:37840827..37844123,3	MCF-7	breast:
4	chr6:37831139..37833570-chr6:37835178..37837982,3	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11752809	0.83[ASN][1000 genomes]
rs11752814	0.83[ASN][1000 genomes]
rs11753300	0.83[ASN][1000 genomes]
rs11759458	0.83[ASN][1000 genomes]
rs11964613	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11964671	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11968604	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11970017	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11970145	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13190751	0.83[ASN][1000 genomes]
rs13200310	0.83[ASN][1000 genomes]
rs13205214	0.91[ASN][1000 genomes]
rs13207526	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13210967	0.91[ASN][1000 genomes]
rs13211881	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13218158	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16890185	0.91[ASN][1000 genomes]
rs16890194	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2103950	0.91[ASN][1000 genomes]
rs2453882	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2645096	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2645098	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2645104	0.95[AMR][1000 genomes]
rs2645115	1.00[AMR][1000 genomes]
rs2645118	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2645121	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2645123	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2645126	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2842498	1.00[AMR][1000 genomes]
rs2842499	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2842506	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2842511	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2842512	0.80[AMR][1000 genomes]
rs2842513	0.87[AMR][1000 genomes]
rs2842514	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2842516	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2842524	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs34011349	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34054102	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34611895	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34745343	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35248825	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35330991	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35379375	0.91[ASN][1000 genomes]
rs35609407	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35653300	0.87[ASN][1000 genomes]
rs35953900	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35955196	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36069529	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4711518	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56391784	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6908106	0.83[ASN][1000 genomes]
rs6910837	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6911481	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6912250	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6918802	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71569395	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7747538	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7757560	1.00[AMR][1000 genomes]
rs7760770	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1016375	chr6:37816863-37865655	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv538204	chr6:37816863-37865655	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37808000-37839000	Weak transcription	Fetal Stomach	stomach
2	chr6:37813600-37845200	Weak transcription	K562	blood
3	chr6:37820000-37850200	Weak transcription	Fetal Kidney	kidney
4	chr6:37824000-37842000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:37829000-37837800	Weak transcription	Dnd41	blood
6	chr6:37831000-37846000	Weak transcription	Esophagus	oesophagus
7	chr6:37831200-37839600	Weak transcription	Fetal Lung	lung
8	chr6:37833000-37837600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr6:37834000-37837800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:37834000-37838000	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:37834000-37845800	Weak transcription	Spleen	Spleen
12	chr6:37834000-37846000	Weak transcription	Lung	lung
13	chr6:37834000-37849200	Weak transcription	Fetal Thymus	thymus
14	chr6:37834400-37837600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:37834400-37838000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr6:37834800-37845600	Weak transcription	Pancreas	Pancrea
17	chr6:37834800-37849200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:37835000-37838000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:37835200-37841400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:37835200-37843400	Weak transcription	Small Intestine	intestine
21	chr6:37835200-37845000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:37835200-37845200	Weak transcription	Right Atrium	heart
23	chr6:37835200-37845600	Weak transcription	Thymus	Thymus
24	chr6:37835400-37841200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr6:37835400-37842400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr6:37836000-37842400	Weak transcription	Liver	Liver
27	chr6:37836000-37844000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:37836200-37837600	Enhancers	Primary T cells fromperipheralblood	blood
29	chr6:37836200-37839000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr6:37836200-37842600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr6:37836200-37843800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:37836400-37838400	Weak transcription	Primary hematopoietic stem cells	blood
33	chr6:37836400-37839400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr6:37836400-37839600	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr6:37836400-37839600	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr6:37836400-37839800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:37836400-37844400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr6:37836400-37845000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:37836400-37845200	Weak transcription	Aorta	Aorta
40	chr6:37836400-37845400	Weak transcription	Brain Hippocampus Middle	brain
41	chr6:37836400-37845800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:37836400-37846400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr6:37836400-37849000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr6:37836400-37849000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr6:37836400-37849400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr6:37836400-37849800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:37836400-37861800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:37836600-37838400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:37836600-37840000	Weak transcription	Colon Smooth Muscle	Colon
50	chr6:37836600-37844200	Weak transcription	Fetal Heart	heart

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