Variant report

Variant	rs16890185
Chromosome Location	chr6:37795279-37795280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37793853..37796744-chr6:37803996..37806760,2	K562	blood:
2	chr6:37784606..37792959-chr6:37792982..37799004,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156639	Chromatin interaction
ENSG00000225945	Chromatin interaction

Extended variants
information (count: 137 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10428769	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10485030	1.00[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10947702	0.89[CEU][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10947704	1.00[CEU][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11751781	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs11751927	0.83[EUR][1000 genomes]
rs11751962	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11752521	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11752809	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11752814	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11753300	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11755095	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11755629	1.00[CEU][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11756713	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11757161	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11759458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11759496	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11759826	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs11964613	1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[ASN][1000 genomes]
rs11964671	1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[ASN][1000 genomes]
rs11967129	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11968604	0.96[ASN][1000 genomes]
rs11969988	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11970017	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11970145	0.96[ASN][1000 genomes]
rs12660919	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12661378	1.00[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12661702	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12662426	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12664091	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12664768	1.00[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13190751	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13195545	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13198459	1.00[JPT][hapmap]
rs13200310	0.83[ASN][1000 genomes]
rs13203867	1.00[JPT][hapmap]
rs13205214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205311	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13206035	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs13207526	1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[ASN][1000 genomes]
rs13210967	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13211881	0.96[ASN][1000 genomes]
rs13218158	0.96[ASN][1000 genomes]
rs13219500	1.00[JPT][hapmap]
rs16890194	1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[ASN][1000 genomes]
rs16890267	0.83[EUR][1000 genomes]
rs2025431	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2103950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2273441	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs2274091	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2453882	1.00[JPT][hapmap];0.80[YRI][hapmap]
rs2645096	1.00[JPT][hapmap]
rs2645098	1.00[JPT][hapmap]
rs2645104	1.00[JPT][hapmap];0.82[YRI][hapmap]
rs2645111	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2645115	1.00[JPT][hapmap]
rs2645125	0.80[AMR][1000 genomes]
rs2645126	1.00[JPT][hapmap];0.80[YRI][hapmap]
rs2645130	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2842499	1.00[JPT][hapmap]
rs2842510	1.00[CEU][hapmap];0.96[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2842511	0.96[YRI][hapmap]
rs2842514	1.00[JPT][hapmap];0.80[YRI][hapmap]
rs2842516	1.00[JPT][hapmap]
rs2842521	0.94[CEU][hapmap];0.93[YRI][hapmap];0.80[AMR][1000 genomes]
rs2842524	1.00[JPT][hapmap]
rs34011349	0.96[ASN][1000 genomes]
rs34254045	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34450348	0.83[EUR][1000 genomes]
rs34611895	0.96[ASN][1000 genomes]
rs34745343	0.96[ASN][1000 genomes]
rs35122358	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35216205	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35248825	0.96[ASN][1000 genomes]
rs35379375	0.91[ASN][1000 genomes]
rs35609407	0.96[ASN][1000 genomes]
rs35653300	0.87[ASN][1000 genomes]
rs35772972	0.83[EUR][1000 genomes]
rs35849984	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35953900	0.83[ASN][1000 genomes]
rs35955196	0.91[ASN][1000 genomes]
rs36069529	0.91[ASN][1000 genomes]
rs3844314	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4394213	1.00[JPT][hapmap]
rs4711518	0.82[JPT][hapmap];0.82[YRI][hapmap]
rs55679841	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55996712	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56023538	0.83[EUR][1000 genomes]
rs56129320	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56177150	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56391784	0.96[ASN][1000 genomes]
rs57402213	0.85[EUR][1000 genomes]
rs58333612	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58611435	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61411293	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6458032	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6458037	1.00[JPT][hapmap]
rs6903743	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6906289	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6908106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6908761	1.00[JPT][hapmap]
rs6910715	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6910837	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6911481	0.82[JPT][hapmap]
rs6911716	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6912250	0.96[ASN][1000 genomes]
rs6916535	1.00[JPT][hapmap]
rs6918802	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6919884	1.00[JPT][hapmap]
rs6923132	1.00[JPT][hapmap]
rs6923254	1.00[JPT][hapmap]
rs6925563	1.00[JPT][hapmap]
rs6933547	0.82[YRI][hapmap]
rs6936260	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6940491	1.00[JPT][hapmap]
rs71569395	0.83[ASN][1000 genomes]
rs73419440	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7742226	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7742379	0.91[ASN][1000 genomes]
rs7745796	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7746266	1.00[CEU][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7747996	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7748312	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs7750445	0.82[JPT][hapmap]
rs7759145	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7759792	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs7760770	0.96[ASN][1000 genomes]
rs7761561	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7762052	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7764130	1.00[CEU][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7773419	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7775794	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7776025	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37789000-37796400	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr6:37789400-37800000	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr6:37790800-37799200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:37791000-37795400	Weak transcription	Hela-S3	cervix
5	chr6:37791000-37798000	Weak transcription	HSMM	muscle
6	chr6:37791000-37799200	Weak transcription	Esophagus	oesophagus
7	chr6:37791000-37800400	Weak transcription	Thymus	Thymus
8	chr6:37791200-37795400	Weak transcription	Fetal Kidney	kidney
9	chr6:37791200-37795400	Weak transcription	HSMMtube	muscle
10	chr6:37791200-37798000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:37791200-37800000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:37791200-37820000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:37791400-37795400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:37791400-37795400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:37791400-37795400	Weak transcription	Brain Anterior Caudate	brain
16	chr6:37791400-37795400	Weak transcription	Spleen	Spleen
17	chr6:37791400-37795600	Weak transcription	Fetal Stomach	stomach
18	chr6:37791400-37796000	Enhancers	Liver	Liver
19	chr6:37791400-37796400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:37791400-37799200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:37791400-37799200	Weak transcription	Pancreas	Pancrea
22	chr6:37791400-37799400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:37791400-37799400	Weak transcription	Aorta	Aorta
24	chr6:37791400-37800400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:37791400-37800400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:37791400-37801800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:37791400-37801800	Weak transcription	Fetal Brain Female	brain
28	chr6:37791400-37801800	Weak transcription	A549	lung
29	chr6:37791400-37810200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr6:37791400-37813400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr6:37791400-37816000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr6:37791600-37795400	Weak transcription	NHEK	skin
33	chr6:37791600-37795600	Weak transcription	Brain Angular Gyrus	brain
34	chr6:37791600-37795800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:37791600-37797400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr6:37791600-37797400	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr6:37791600-37797400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr6:37791600-37798200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr6:37791600-37799200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:37791600-37800000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:37791600-37801400	Weak transcription	Brain Germinal Matrix	brain
42	chr6:37791800-37795400	Weak transcription	Fetal Muscle Leg	muscle
43	chr6:37792000-37795400	Weak transcription	Fetal Muscle Trunk	muscle
44	chr6:37792000-37795400	Weak transcription	K562	blood
45	chr6:37792000-37800400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:37792400-37796200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr6:37792400-37800400	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr6:37792400-37801800	Weak transcription	Fetal Brain Male	brain
49	chr6:37793200-37796000	Enhancers	Primary T cells from cord blood	blood
50	chr6:37793200-37796000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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