Variant report

Variant	rs7750445
Chromosome Location	chr6:37764977-37764978
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37764739..37766769-chr6:37785115..37786882,2	K562	blood:
2	chr6:37756866..37759341-chr6:37763585..37765183,2	K562	blood:
3	chr6:37762868..37765760-chr6:37771569..37774274,2	MCF-7	breast:
4	chr6:37764796..37769141-chr6:37786360..37788768,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156639	Chromatin interaction
ENSG00000225945	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11759458	0.82[JPT][hapmap]
rs11964613	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11964671	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11970017	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs13198459	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[YRI][hapmap]
rs13200310	0.83[ASN][1000 genomes]
rs13203867	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs13205214	0.82[JPT][hapmap]
rs13207526	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs13210967	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[YRI][hapmap]
rs13219500	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs16890185	0.82[JPT][hapmap]
rs16890194	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2453882	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2645096	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2645098	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2645126	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2842499	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2842514	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2842516	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2842524	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4394213	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4711518	1.00[CHB][hapmap]
rs55996712	0.83[ASN][1000 genomes]
rs56177150	0.83[ASN][1000 genomes]
rs6458037	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[YRI][hapmap]
rs6908106	0.82[JPT][hapmap]
rs6908761	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6910180	0.85[JPT][hapmap]
rs6910715	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6910837	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6911481	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6916535	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6918802	1.00[CHB][hapmap]
rs6919884	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[YRI][hapmap]
rs6923132	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6923254	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6925563	1.00[CHB][hapmap]
rs6936260	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs71569394	0.87[ASN][1000 genomes]
rs7762052	1.00[JPT][hapmap]
rs7776025	1.00[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37759200-37768400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:37759600-37766000	Weak transcription	Lung	lung
3	chr6:37759600-37767200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:37759600-37767200	Weak transcription	Right Atrium	heart
5	chr6:37759800-37768600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:37761600-37766200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:37762400-37766000	Enhancers	HepG2	liver
8	chr6:37763400-37766600	Weak transcription	HSMMtube	muscle
9	chr6:37764200-37765600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:37764200-37766400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:37764400-37766600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:37764600-37765600	Weak transcription	Liver	Liver
13	chr6:37764600-37766000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:37764600-37766000	Weak transcription	Pancreas	Pancrea

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