Variant report

Variant	rs6911481
Chromosome Location	chr6:37777462-37777463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37756505..37762867-chr6:37772774..37778127,6	MCF-7	breast:
2	chr6:37773348..37778942-chr6:37784434..37789284,15	MCF-7	breast:
3	chr6:37777163..37778729-chr6:37778930..37781704,2	MCF-7	breast:
4	chr6:37771553..37779758-chr6:37784024..37789413,23	MCF-7	breast:
5	chr6:37773868..37777488-chr6:37778348..37782159,4	K562	blood:

Variant related genes	Relation type
ENSG00000225945	Chromatin interaction
ENSG00000156639	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs11752809	0.87[ASN][1000 genomes]
rs11752814	0.87[ASN][1000 genomes]
rs11753300	0.87[ASN][1000 genomes]
rs11759458	0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs11964613	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11964671	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11968604	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11970017	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11970145	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13190751	0.87[ASN][1000 genomes]
rs13198459	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs13200310	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13203867	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs13205214	0.82[JPT][hapmap]
rs13207526	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13210967	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes]
rs13211881	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13218158	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13219500	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs16890185	0.82[JPT][hapmap]
rs16890194	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16890301	0.88[CEU][hapmap]
rs2395689	0.88[CEU][hapmap]
rs2453882	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2645096	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2645098	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2645104	0.86[AMR][1000 genomes]
rs2645118	1.00[AMR][1000 genomes]
rs2645121	1.00[AMR][1000 genomes]
rs2645123	0.91[AMR][1000 genomes]
rs2645126	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];1.00[AMR][1000 genomes]
rs2842499	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2842506	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2842511	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs2842512	0.82[EUR][1000 genomes]
rs2842513	0.82[EUR][1000 genomes]
rs2842514	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2842516	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2842524	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes]
rs34011349	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34054102	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34611895	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34745343	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35248825	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35330991	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35379375	0.91[EUR][1000 genomes]
rs35609407	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35653300	0.83[EUR][1000 genomes]
rs35953900	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35955196	0.87[EUR][1000 genomes]
rs36069529	0.87[EUR][1000 genomes]
rs4394213	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4711518	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55996712	0.96[ASN][1000 genomes]
rs56177150	0.96[ASN][1000 genomes]
rs56391784	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6458037	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6908106	0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs6908761	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6910180	0.85[JPT][hapmap]
rs6910715	1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[ASN][1000 genomes]
rs6910837	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6912250	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6916535	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6918802	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6919884	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6923132	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6923254	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6925563	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs6933547	0.96[YRI][hapmap]
rs6936260	1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[ASN][1000 genomes]
rs71569394	0.91[ASN][1000 genomes]
rs71569395	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7742379	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7750445	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7760770	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7762052	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7776025	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37775200-37777600	Enhancers	HMEC	breast
2	chr6:37775400-37777600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:37775400-37777600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:37776000-37785200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:37776400-37785800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:37777200-37777600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:37777200-37786000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:37777400-37777600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:37777400-37779000	Weak transcription	Psoas Muscle	Psoas

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