Variant report

Variant	rs35248825
Chromosome Location	chr6:37833094-37833095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37785357..37787655-chr6:37832956..37835943,2	K562	blood:
2	chr6:37831095..37834657-chr6:37839870..37842931,3	MCF-7	breast:
3	chr6:37827459..37830301-chr6:37832209..37835878,4	MCF-7	breast:
4	chr6:37831139..37833570-chr6:37835178..37837982,3	K562	blood:

Variant related genes	Relation type
ENSG00000225945	Chromatin interaction
ENSG00000156639	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs11752809	0.87[ASN][1000 genomes]
rs11752814	0.87[ASN][1000 genomes]
rs11753300	0.87[ASN][1000 genomes]
rs11759458	0.87[ASN][1000 genomes]
rs11964613	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964671	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968604	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970017	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970145	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13190751	0.87[ASN][1000 genomes]
rs13198459	0.83[EUR][1000 genomes]
rs13200310	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13203867	0.83[EUR][1000 genomes]
rs13205214	0.96[ASN][1000 genomes]
rs13207526	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13210967	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13211881	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13218158	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219500	0.83[EUR][1000 genomes]
rs16890185	0.96[ASN][1000 genomes]
rs16890194	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2103950	0.96[ASN][1000 genomes]
rs2395689	0.83[EUR][1000 genomes]
rs2453882	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2645096	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2645098	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2645104	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs2645115	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2645118	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2645121	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2645123	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2645126	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28385568	0.83[EUR][1000 genomes]
rs2842498	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2842499	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2842506	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2842511	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2842512	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2842513	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2842514	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2842516	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2842524	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs33997846	0.83[EUR][1000 genomes]
rs34011349	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34054102	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34611895	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34618835	0.83[EUR][1000 genomes]
rs34634043	0.83[EUR][1000 genomes]
rs34745343	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35051126	0.83[EUR][1000 genomes]
rs35330991	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35379375	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35465740	0.83[EUR][1000 genomes]
rs35575717	0.83[EUR][1000 genomes]
rs35609407	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35653300	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35849984	0.84[ASN][1000 genomes]
rs35953900	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35955196	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36069529	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4394213	0.83[EUR][1000 genomes]
rs4711518	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56391784	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56678832	0.83[EUR][1000 genomes]
rs6908106	0.87[ASN][1000 genomes]
rs6910837	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6911481	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6912250	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918802	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919884	0.81[EUR][1000 genomes]
rs6923132	0.83[EUR][1000 genomes]
rs6923254	0.83[EUR][1000 genomes]
rs6925563	0.83[EUR][1000 genomes]
rs71569395	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71569397	0.83[EUR][1000 genomes]
rs7742379	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7747538	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7757560	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7760770	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776025	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1016375	chr6:37816863-37865655	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv538204	chr6:37816863-37865655	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37800200-37836200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:37801200-37833400	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:37802600-37834400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:37808000-37839000	Weak transcription	Fetal Stomach	stomach
5	chr6:37812600-37836000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:37813600-37845200	Weak transcription	K562	blood
7	chr6:37814000-37835400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:37814200-37833400	Weak transcription	HSMMtube	muscle
9	chr6:37818000-37833800	Weak transcription	NHLF	lung
10	chr6:37818400-37833400	Weak transcription	Gastric	stomach
11	chr6:37818400-37833400	Weak transcription	Right Ventricle	heart
12	chr6:37818400-37836000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:37819000-37833400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:37820000-37833600	Weak transcription	Adipose Nuclei	Adipose
15	chr6:37820000-37834600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:37820000-37835400	Weak transcription	Fetal Heart	heart
17	chr6:37820000-37850200	Weak transcription	Fetal Kidney	kidney
18	chr6:37820400-37836000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr6:37824000-37842000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:37824400-37836200	Weak transcription	Fetal Intestine Large	intestine
21	chr6:37825800-37833400	Weak transcription	Aorta	Aorta
22	chr6:37826200-37833400	Weak transcription	Pancreas	Pancrea
23	chr6:37826200-37834400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:37826200-37834600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr6:37826400-37834600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr6:37826400-37835000	Weak transcription	HUVEC	blood vessel
27	chr6:37826800-37836200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr6:37827000-37833600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:37827200-37833400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:37827200-37834200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr6:37827600-37834400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:37827600-37834400	Weak transcription	Stomach Mucosa	stomach
33	chr6:37828400-37834400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr6:37828600-37835400	Weak transcription	Brain Germinal Matrix	brain
35	chr6:37828800-37835000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:37829000-37837800	Weak transcription	Dnd41	blood
37	chr6:37829200-37834600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:37830600-37833400	Weak transcription	Left Ventricle	heart
39	chr6:37830600-37834600	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr6:37830600-37834600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr6:37831000-37833400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:37831000-37833400	Weak transcription	Spleen	Spleen
43	chr6:37831000-37833800	Weak transcription	Lung	lung
44	chr6:37831000-37834400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr6:37831000-37834600	Weak transcription	Ovary	ovary
46	chr6:37831000-37836000	Weak transcription	Hela-S3	cervix
47	chr6:37831000-37836200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr6:37831000-37846000	Weak transcription	Esophagus	oesophagus
49	chr6:37831200-37833600	Weak transcription	NHEK	skin
50	chr6:37831200-37834400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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