Variant report

Variant	rs11753300
Chromosome Location	chr6:37783934-37783935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr6:37783917-37784079	K562	blood:	n/a	n/a
2	POLR2A	chr6:37783865-37784117	MCF10A-Er-Src	breast:	n/a	n/a
3	ATF1	chr6:37783805-37783955	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:37772786..37776209-chr6:37782926..37786197,4	K562	blood:
2	chr6:37670172..37672824-chr6:37782516..37784751,2	K562	blood:
3	chr6:37782550..37785010-chr6:37814396..37816416,2	K562	blood:

Variant related genes	Relation type
ZFAND3	TF binding region

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10428769	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10485030	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10947702	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10947704	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11751781	0.81[EUR][1000 genomes]
rs11751927	0.82[EUR][1000 genomes]
rs11751962	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11752521	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11752809	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752814	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755095	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11755629	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11756713	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11757161	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11759458	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759496	0.87[EUR][1000 genomes]
rs11759826	0.81[EUR][1000 genomes]
rs11964613	0.87[ASN][1000 genomes]
rs11964671	0.87[ASN][1000 genomes]
rs11967129	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11968604	0.87[ASN][1000 genomes]
rs11969988	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11970017	0.87[ASN][1000 genomes]
rs11970145	0.87[ASN][1000 genomes]
rs12660919	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12661378	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12661702	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12662426	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12664091	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12664768	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13190751	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13195545	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13200310	0.91[ASN][1000 genomes]
rs13205214	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13205311	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13206035	0.83[EUR][1000 genomes]
rs13207526	0.87[ASN][1000 genomes]
rs13210967	0.83[ASN][1000 genomes]
rs13211881	0.87[ASN][1000 genomes]
rs13218158	0.87[ASN][1000 genomes]
rs16890185	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16890194	0.87[ASN][1000 genomes]
rs16890267	0.82[EUR][1000 genomes]
rs2025431	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2103950	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2273441	0.83[EUR][1000 genomes]
rs2274091	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2645111	0.81[EUR][1000 genomes]
rs2645125	0.80[AMR][1000 genomes]
rs2645130	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2842510	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2842521	0.80[AMR][1000 genomes]
rs34011349	0.87[ASN][1000 genomes]
rs34254045	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34450348	0.81[EUR][1000 genomes]
rs34611895	0.87[ASN][1000 genomes]
rs34745343	0.87[ASN][1000 genomes]
rs35122358	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35216205	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35248825	0.87[ASN][1000 genomes]
rs35379375	0.83[ASN][1000 genomes]
rs35609407	0.87[ASN][1000 genomes]
rs35772972	0.81[EUR][1000 genomes]
rs35849984	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35955196	0.83[ASN][1000 genomes]
rs36069529	0.83[ASN][1000 genomes]
rs3844314	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55679841	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55996712	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56023538	0.81[EUR][1000 genomes]
rs56129320	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56177150	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56391784	0.87[ASN][1000 genomes]
rs57402213	0.83[EUR][1000 genomes]
rs58333612	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58611435	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61411293	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6458032	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6903743	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6906289	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6908106	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910715	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6911481	0.87[ASN][1000 genomes]
rs6911716	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6912250	0.87[ASN][1000 genomes]
rs6918802	0.87[ASN][1000 genomes]
rs6936260	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs71569394	0.87[ASN][1000 genomes]
rs73419440	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7742226	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7742379	0.83[ASN][1000 genomes]
rs7745796	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7746266	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7747996	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7748312	0.83[EUR][1000 genomes]
rs7759145	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7759792	0.81[EUR][1000 genomes]
rs7760770	0.87[ASN][1000 genomes]
rs7761561	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7762052	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7764130	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7773419	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7775794	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37776000-37785200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:37776400-37785800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:37777200-37786000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:37781400-37785800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:37781400-37785800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:37783400-37784600	Enhancers	HepG2	liver
7	chr6:37783600-37784800	Weak transcription	Fetal Kidney	kidney
8	chr6:37783600-37785200	Enhancers	HSMMtube	muscle
9	chr6:37783800-37784800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:37783800-37785800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:37783800-37785800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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