Variant report

Variant	rs6903743
Chromosome Location	chr6:37846257-37846258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37827303..37828901-chr6:37845340..37847699,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10428769	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10485030	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10947702	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10947704	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11751781	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11751927	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11751962	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11752521	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11752809	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11752814	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11753300	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11755095	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11755629	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11756713	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11757161	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11759458	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11759496	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11759826	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11967129	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11969988	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12660919	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12661378	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12661702	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12662426	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12664091	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12664768	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13190751	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13195545	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13205214	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13205311	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13206035	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16890185	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16890215	0.81[ASN][1000 genomes]
rs16890267	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2025431	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2103950	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2273441	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2274091	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2395689	0.86[ASN][1000 genomes]
rs2645111	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2645125	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2645130	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2842510	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2842511	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2842512	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2842521	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34254045	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34450348	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35051126	0.86[ASN][1000 genomes]
rs35122358	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35216205	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35772972	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35849984	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3844314	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55679841	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55996712	0.81[AMR][1000 genomes]
rs56023538	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56129320	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56177150	0.81[AMR][1000 genomes]
rs57402213	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58320470	0.81[ASN][1000 genomes]
rs58333612	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58611435	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61090283	0.81[ASN][1000 genomes]
rs61411293	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6458032	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6906289	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6908106	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6910715	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6911716	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6936260	0.83[AMR][1000 genomes]
rs73419440	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7742226	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7745796	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7746266	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7747996	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7748312	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7759145	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7759792	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7761561	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7762052	0.81[AMR][1000 genomes]
rs7764130	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7773419	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7775794	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1016375	chr6:37816863-37865655	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv538204	chr6:37816863-37865655	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37820000-37850200	Weak transcription	Fetal Kidney	kidney
2	chr6:37834000-37849200	Weak transcription	Fetal Thymus	thymus
3	chr6:37834800-37849200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:37836400-37846400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:37836400-37849000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:37836400-37849000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:37836400-37849400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:37836400-37849800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:37836400-37861800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:37836600-37847800	Weak transcription	A549	lung
11	chr6:37836600-37849000	Weak transcription	Primary B cells from cord blood	blood
12	chr6:37837000-37849200	Weak transcription	HSMMtube	muscle
13	chr6:37837200-37856000	Weak transcription	NHEK	skin
14	chr6:37840200-37848000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:37840200-37855400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:37840400-37850200	Weak transcription	HMEC	breast
17	chr6:37840400-37860000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:37840600-37861800	Weak transcription	Primary T cells from cord blood	blood
19	chr6:37840800-37849200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:37841200-37849000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr6:37841200-37852200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:37841400-37849000	Weak transcription	Placenta	Placenta
23	chr6:37841600-37862400	Weak transcription	Fetal Lung	lung
24	chr6:37841800-37850400	Weak transcription	Fetal Intestine Small	intestine
25	chr6:37842000-37849200	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr6:37842800-37847200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:37842800-37849200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:37842800-37849200	Weak transcription	HepG2	liver
29	chr6:37843400-37848200	Enhancers	Liver	Liver
30	chr6:37843600-37846600	Weak transcription	Small Intestine	intestine
31	chr6:37843600-37847200	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr6:37844000-37848400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr6:37844200-37846400	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr6:37844400-37846400	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr6:37844400-37846400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:37844400-37846400	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr6:37844400-37846400	Enhancers	Osteobl	bone
38	chr6:37844400-37846600	Enhancers	NHDF-Ad	bronchial
39	chr6:37844400-37846800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr6:37844800-37846800	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr6:37844800-37847600	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr6:37844800-37849200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:37845000-37846400	Enhancers	Duodenum Mucosa	Duodenum
44	chr6:37845000-37846600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:37845000-37847400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:37845200-37846400	Enhancers	Aorta	Aorta
47	chr6:37845200-37846400	Enhancers	Brain Angular Gyrus	brain
48	chr6:37845200-37846400	Enhancers	Right Atrium	heart
49	chr6:37845200-37846400	Enhancers	HSMM	muscle
50	chr6:37845200-37846600	Enhancers	Muscle Satellite Cultured Cells	--

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