Variant report

Variant	rs56177150
Chromosome Location	chr6:37771477-37771478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37770736..37773178-chr6:37775480..37777289,2	K562	blood:
2	chr6:37765846..37768187-chr6:37771368..37772947,2	K562	blood:
3	chr6:37770736..37773178-chr6:37775480..37777364,3	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10428769	0.81[AMR][1000 genomes]
rs10485030	0.81[AMR][1000 genomes]
rs10947702	0.81[AMR][1000 genomes]
rs10947704	0.81[AMR][1000 genomes]
rs11752521	0.81[AMR][1000 genomes]
rs11752809	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11752814	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11753300	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11755095	0.81[AMR][1000 genomes]
rs11755629	0.81[AMR][1000 genomes]
rs11756713	0.81[AMR][1000 genomes]
rs11757161	0.81[AMR][1000 genomes]
rs11759458	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11967129	0.81[AMR][1000 genomes]
rs11969988	0.81[AMR][1000 genomes]
rs12661378	0.81[AMR][1000 genomes]
rs12661702	0.81[AMR][1000 genomes]
rs12662426	0.81[AMR][1000 genomes]
rs12664091	0.81[AMR][1000 genomes]
rs12664768	0.81[AMR][1000 genomes]
rs13190751	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13195545	0.81[AMR][1000 genomes]
rs13200310	0.83[ASN][1000 genomes]
rs13205214	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13205311	0.81[AMR][1000 genomes]
rs16890185	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2025431	0.81[AMR][1000 genomes]
rs2103950	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2274091	0.81[AMR][1000 genomes]
rs2645130	0.81[AMR][1000 genomes]
rs34254045	0.81[AMR][1000 genomes]
rs35122358	0.81[AMR][1000 genomes]
rs35216205	0.81[AMR][1000 genomes]
rs35849984	0.85[AMR][1000 genomes]
rs3844314	0.81[AMR][1000 genomes]
rs55679841	0.81[AMR][1000 genomes]
rs55996712	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56129320	0.83[AMR][1000 genomes]
rs58333612	0.81[AMR][1000 genomes]
rs58611435	0.81[AMR][1000 genomes]
rs61411293	0.81[AMR][1000 genomes]
rs6458032	0.81[AMR][1000 genomes]
rs6903743	0.81[AMR][1000 genomes]
rs6906289	0.81[AMR][1000 genomes]
rs6908106	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6910715	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6911481	0.96[ASN][1000 genomes]
rs6911716	0.81[AMR][1000 genomes]
rs6936260	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71569394	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7742226	0.81[AMR][1000 genomes]
rs7746266	0.81[AMR][1000 genomes]
rs7750445	0.83[ASN][1000 genomes]
rs7759145	0.81[AMR][1000 genomes]
rs7761561	0.81[AMR][1000 genomes]
rs7762052	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7764130	0.81[AMR][1000 genomes]
rs7773419	0.81[AMR][1000 genomes]
rs7775794	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37766400-37775400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:37767400-37775400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:37767400-37777000	Weak transcription	Right Atrium	heart
4	chr6:37769000-37775400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:37769600-37772000	Weak transcription	HepG2	liver
6	chr6:37769600-37776800	Weak transcription	Liver	Liver
7	chr6:37770600-37772600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:37771200-37772800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr6:37771400-37772400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:37771400-37772600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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