Variant report

Variant	rs34745343
Chromosome Location	chr6:37795156-37795157
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37793853..37796744-chr6:37803996..37806760,2	K562	blood:
2	chr6:37784606..37792959-chr6:37792982..37799004,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225945	Chromatin interaction
ENSG00000156639	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11752809	0.87[ASN][1000 genomes]
rs11752814	0.87[ASN][1000 genomes]
rs11753300	0.87[ASN][1000 genomes]
rs11759458	0.87[ASN][1000 genomes]
rs11964613	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964671	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968604	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970017	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970145	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13190751	0.87[ASN][1000 genomes]
rs13200310	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13205214	0.96[ASN][1000 genomes]
rs13207526	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13210967	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13211881	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13218158	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16890185	0.96[ASN][1000 genomes]
rs16890194	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2103950	0.96[ASN][1000 genomes]
rs2453882	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2645096	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2645098	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2645104	0.95[AMR][1000 genomes]
rs2645115	1.00[AMR][1000 genomes]
rs2645118	0.91[AMR][1000 genomes]
rs2645121	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2645123	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2645126	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2842498	1.00[AMR][1000 genomes]
rs2842499	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2842506	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2842511	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2842512	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2842513	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2842514	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2842516	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2842524	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs34011349	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34054102	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34611895	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35248825	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35330991	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35379375	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35609407	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35653300	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35849984	0.84[ASN][1000 genomes]
rs35953900	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35955196	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36069529	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4711518	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56391784	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908106	0.87[ASN][1000 genomes]
rs6910837	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6911481	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6912250	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918802	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71569395	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7742379	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7747538	0.84[AMR][1000 genomes]
rs7760770	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37789000-37796400	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr6:37789400-37800000	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr6:37790800-37799200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:37791000-37795400	Weak transcription	Hela-S3	cervix
5	chr6:37791000-37798000	Weak transcription	HSMM	muscle
6	chr6:37791000-37799200	Weak transcription	Esophagus	oesophagus
7	chr6:37791000-37800400	Weak transcription	Thymus	Thymus
8	chr6:37791200-37795400	Weak transcription	Fetal Kidney	kidney
9	chr6:37791200-37795400	Weak transcription	HSMMtube	muscle
10	chr6:37791200-37798000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:37791200-37800000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:37791200-37820000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:37791400-37795200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:37791400-37795400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:37791400-37795400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:37791400-37795400	Weak transcription	Brain Anterior Caudate	brain
17	chr6:37791400-37795400	Weak transcription	Spleen	Spleen
18	chr6:37791400-37795600	Weak transcription	Fetal Stomach	stomach
19	chr6:37791400-37796000	Enhancers	Liver	Liver
20	chr6:37791400-37796400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:37791400-37799200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:37791400-37799200	Weak transcription	Pancreas	Pancrea
23	chr6:37791400-37799400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:37791400-37799400	Weak transcription	Aorta	Aorta
25	chr6:37791400-37800400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:37791400-37800400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:37791400-37801800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:37791400-37801800	Weak transcription	Fetal Brain Female	brain
29	chr6:37791400-37801800	Weak transcription	A549	lung
30	chr6:37791400-37810200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr6:37791400-37813400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:37791400-37816000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr6:37791600-37795200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr6:37791600-37795400	Weak transcription	NHEK	skin
35	chr6:37791600-37795600	Weak transcription	Brain Angular Gyrus	brain
36	chr6:37791600-37795800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:37791600-37797400	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:37791600-37797400	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr6:37791600-37797400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr6:37791600-37798200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr6:37791600-37799200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:37791600-37800000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:37791600-37801400	Weak transcription	Brain Germinal Matrix	brain
44	chr6:37791800-37795400	Weak transcription	Fetal Muscle Leg	muscle
45	chr6:37792000-37795400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr6:37792000-37795400	Weak transcription	K562	blood
47	chr6:37792000-37800400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:37792400-37796200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr6:37792400-37800400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr6:37792400-37801800	Weak transcription	Fetal Brain Male	brain

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