Variant report

Variant	rs11968604
Chromosome Location	chr6:37807007-37807008
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37803626..37806524-chr6:37806785..37809778,2	K562	blood:
2	chr6:37785007..37788077-chr6:37806968..37810692,5	K562	blood:
3	chr6:37785007..37788077-chr6:37806355..37810692,7	K562	blood:
4	chr6:37797639..37800200-chr6:37805960..37807518,2	K562	blood:
5	chr6:37806617..37808681-chr6:37810384..37812379,2	K562	blood:
6	chr6:37795700..37797333-chr6:37806098..37807674,2	K562	blood:

Variant related genes	Relation type
ENSG00000156639	Chromatin interaction
ENSG00000225945	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11752809	0.87[ASN][1000 genomes]
rs11752814	0.87[ASN][1000 genomes]
rs11753300	0.87[ASN][1000 genomes]
rs11759458	0.87[ASN][1000 genomes]
rs11964613	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964671	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970017	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970145	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13190751	0.87[ASN][1000 genomes]
rs13200310	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13205214	0.96[ASN][1000 genomes]
rs13207526	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13210967	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13211881	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13218158	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16890185	0.96[ASN][1000 genomes]
rs16890194	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2103950	0.96[ASN][1000 genomes]
rs2453882	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2645096	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2645098	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2645104	0.91[AMR][1000 genomes]
rs2645115	0.95[AMR][1000 genomes]
rs2645118	0.86[AMR][1000 genomes]
rs2645121	0.86[AMR][1000 genomes]
rs2645126	0.86[AMR][1000 genomes]
rs2842498	0.95[AMR][1000 genomes]
rs2842499	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2842506	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2842513	0.83[AMR][1000 genomes]
rs2842514	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2842516	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34011349	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34054102	0.95[AMR][1000 genomes]
rs34611895	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34745343	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35248825	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35330991	0.95[AMR][1000 genomes]
rs35379375	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35609407	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35653300	0.91[ASN][1000 genomes]
rs35849984	0.84[ASN][1000 genomes]
rs35953900	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35955196	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36069529	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4711518	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56391784	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908106	0.87[ASN][1000 genomes]
rs6910837	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6911481	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6912250	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918802	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71569395	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7742379	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7757560	0.95[AMR][1000 genomes]
rs7760770	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37791200-37820000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:37791400-37810200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:37791400-37813400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:37791400-37816000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:37793800-37813600	Weak transcription	NH-A	brain
6	chr6:37794000-37819800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:37795000-37813800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:37795000-37825600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:37795800-37813400	Weak transcription	HSMMtube	muscle
10	chr6:37796000-37812800	Weak transcription	Colonic Mucosa	Colon
11	chr6:37796000-37813200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:37796000-37813800	Weak transcription	NHDF-Ad	bronchial
13	chr6:37796000-37815600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:37796000-37828800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:37796000-37830600	Weak transcription	Hela-S3	cervix
16	chr6:37796200-37811400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:37796200-37813200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:37797800-37808200	Weak transcription	Brain Anterior Caudate	brain
19	chr6:37798400-37812800	Weak transcription	HSMM	muscle
20	chr6:37798400-37815200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr6:37798400-37815800	Weak transcription	Fetal Heart	heart
22	chr6:37799000-37808400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:37799400-37817400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:37799600-37808000	Weak transcription	K562	blood
25	chr6:37799600-37809400	Weak transcription	Lung	lung
26	chr6:37799600-37811200	Weak transcription	Brain Substantia Nigra	brain
27	chr6:37799600-37811800	Weak transcription	Placenta	Placenta
28	chr6:37799600-37812800	Weak transcription	NHEK	skin
29	chr6:37799600-37813400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:37799600-37825800	Weak transcription	Esophagus	oesophagus
31	chr6:37799800-37825400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr6:37800000-37808200	Weak transcription	Liver	Liver
33	chr6:37800200-37812800	Weak transcription	Gastric	stomach
34	chr6:37800200-37813400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr6:37800200-37830200	Weak transcription	Ovary	ovary
36	chr6:37800200-37836200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:37800400-37807800	Weak transcription	HepG2	liver
38	chr6:37800400-37813200	Weak transcription	Colon Smooth Muscle	Colon
39	chr6:37800600-37809600	Weak transcription	Small Intestine	intestine
40	chr6:37800800-37809600	Weak transcription	Right Ventricle	heart
41	chr6:37801000-37807400	Weak transcription	Psoas Muscle	Psoas
42	chr6:37801000-37809400	Weak transcription	Left Ventricle	heart
43	chr6:37801000-37811400	Weak transcription	Thymus	Thymus
44	chr6:37801000-37811600	Weak transcription	Fetal Thymus	thymus
45	chr6:37801000-37811800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr6:37801000-37813600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:37801000-37817600	Weak transcription	Spleen	Spleen
48	chr6:37801000-37818600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:37801200-37833400	Weak transcription	Fetal Muscle Leg	muscle
50	chr6:37801600-37807800	Weak transcription	Fetal Stomach	stomach

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