Variant report

Variant	rs6923254
Chromosome Location	chr6:37931996-37931997
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs11759458	1.00[JPT][hapmap]
rs11964613	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11964671	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11970017	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13195333	0.84[AFR][1000 genomes]
rs13198459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13200310	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13203867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13205214	1.00[JPT][hapmap]
rs13207526	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs13210087	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13210967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13211881	0.83[EUR][1000 genomes]
rs13217630	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs13219500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16890185	1.00[JPT][hapmap]
rs16890194	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16890301	1.00[CEU][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs16890365	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs2395689	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2453882	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2645096	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2645098	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2645104	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2645115	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2645126	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28385568	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842499	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2842506	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2842511	0.89[EUR][1000 genomes]
rs2842512	0.85[EUR][1000 genomes]
rs2842513	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2842514	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2842516	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2842524	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs33997846	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34054102	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34123707	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34449592	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34618835	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34634043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34754573	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35051126	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35202194	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs35248825	0.83[EUR][1000 genomes]
rs35330991	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35379375	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35465740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35575717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35597126	0.81[AFR][1000 genomes]
rs35653300	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35815938	0.81[AFR][1000 genomes]
rs35953900	0.87[EUR][1000 genomes]
rs35955196	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs36069529	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4394213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4711518	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55943813	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56678832	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6458037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6908106	1.00[JPT][hapmap]
rs6908761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6910715	0.82[JPT][hapmap]
rs6910837	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs6911481	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6912250	0.83[EUR][1000 genomes]
rs6916057	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs6916535	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6917208	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6917736	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6918802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs6919884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6923132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923665	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6925563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6936260	0.82[JPT][hapmap]
rs6940491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs71569395	0.87[EUR][1000 genomes]
rs71569397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71569399	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs71569402	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7740636	0.81[AFR][1000 genomes]
rs7747538	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7750445	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7760770	0.83[EUR][1000 genomes]
rs7762052	0.82[JPT][hapmap]
rs7766767	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs7776025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9296236	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv602956	chr6:37909084-37986489	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2761037	chr6:37930659-37966762	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37887600-37933200	Weak transcription	NHDF-Ad	bronchial
2	chr6:37904800-37933400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:37911000-37933200	Weak transcription	NHEK	skin
4	chr6:37911600-37935400	Weak transcription	Primary B cells from cord blood	blood
5	chr6:37911600-37936200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:37920000-37933600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:37921000-37933000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:37922200-37933400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:37922600-37939000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:37922800-37938600	Weak transcription	Fetal Lung	lung
11	chr6:37922800-37957600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:37922800-37958600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:37923000-37939000	Weak transcription	Ovary	ovary
14	chr6:37923600-37938800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr6:37923600-37942200	Weak transcription	Aorta	Aorta
16	chr6:37923600-37947400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr6:37923800-37934200	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:37924400-37932400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr6:37924600-37941600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:37925000-37934600	Weak transcription	A549	lung
21	chr6:37925200-37933200	Weak transcription	Osteobl	bone
22	chr6:37925200-37938800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:37925400-37933600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:37925400-37939400	Weak transcription	Adipose Nuclei	Adipose
25	chr6:37925600-37934200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:37925600-37936400	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:37926000-37936200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:37926400-37933400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:37926800-37955000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:37927000-37933000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:37927000-37933600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:37927000-37937600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:37927000-37942400	Weak transcription	Psoas Muscle	Psoas
34	chr6:37927200-37933400	Weak transcription	HSMM	muscle
35	chr6:37927200-37933800	Weak transcription	Small Intestine	intestine
36	chr6:37927200-37942400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr6:37928000-37934400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:37928000-37935800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr6:37928400-37933200	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr6:37928400-37933600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr6:37928600-37932200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr6:37928800-37933400	Weak transcription	Primary B cells from peripheral blood	blood
43	chr6:37929400-37932000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:37929400-37933200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr6:37929400-37933400	Weak transcription	Gastric	stomach
46	chr6:37929400-37933600	Weak transcription	Pancreas	Pancrea
47	chr6:37929400-37933800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr6:37929400-37936200	Weak transcription	Left Ventricle	heart
49	chr6:37929400-37938200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr6:37929400-37938800	Weak transcription	Fetal Stomach	stomach

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