Variant report

Variant	rs6916535
Chromosome Location	chr6:37936595-37936596
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37922083..37924500-chr6:37934489..37937047,2	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11759458	1.00[JPT][hapmap]
rs11964613	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11964671	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11970017	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13198459	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13203867	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13205214	1.00[JPT][hapmap]
rs13207526	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13210967	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13217630	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs13219500	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16890185	1.00[JPT][hapmap]
rs16890194	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16890365	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2453882	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2645096	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2645098	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2645104	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2645115	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2645126	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28385568	1.00[ASN][1000 genomes]
rs2842499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2842506	0.91[ASN][1000 genomes]
rs2842513	0.91[ASN][1000 genomes]
rs2842514	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2842516	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2842524	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs33997846	0.95[ASN][1000 genomes]
rs34054102	0.91[ASN][1000 genomes]
rs34123707	0.80[ASN][1000 genomes]
rs34449592	0.95[ASN][1000 genomes]
rs34618835	0.91[ASN][1000 genomes]
rs34634043	1.00[ASN][1000 genomes]
rs34754573	0.80[ASN][1000 genomes]
rs35330991	0.91[ASN][1000 genomes]
rs35465740	1.00[ASN][1000 genomes]
rs35575717	0.95[ASN][1000 genomes]
rs4394213	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4711518	1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs55943813	0.80[ASN][1000 genomes]
rs56678832	0.95[ASN][1000 genomes]
rs6458037	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6908106	1.00[JPT][hapmap]
rs6908761	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6910715	0.82[JPT][hapmap]
rs6910837	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6911481	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6916057	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6917208	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6918802	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6919884	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6923132	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6923254	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6923665	0.80[ASN][1000 genomes]
rs6925563	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.95[ASN][1000 genomes]
rs6936260	0.82[JPT][hapmap]
rs6940491	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs71569397	1.00[ASN][1000 genomes]
rs71569399	0.80[ASN][1000 genomes]
rs7747538	0.83[ASN][1000 genomes]
rs7750445	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7762052	0.82[JPT][hapmap]
rs7766767	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7776025	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9296236	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv602956	chr6:37909084-37986489	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2761037	chr6:37930659-37966762	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37922600-37939000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:37922800-37938600	Weak transcription	Fetal Lung	lung
3	chr6:37922800-37957600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:37922800-37958600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:37923000-37939000	Weak transcription	Ovary	ovary
6	chr6:37923600-37938800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:37923600-37942200	Weak transcription	Aorta	Aorta
8	chr6:37923600-37947400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:37924600-37941600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:37925200-37938800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:37925400-37939400	Weak transcription	Adipose Nuclei	Adipose
12	chr6:37926800-37955000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:37927000-37937600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:37927000-37942400	Weak transcription	Psoas Muscle	Psoas
15	chr6:37927200-37942400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:37929400-37938200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:37929400-37938800	Weak transcription	Fetal Stomach	stomach
18	chr6:37929400-37939400	Weak transcription	Spleen	Spleen
19	chr6:37929400-37942000	Weak transcription	Esophagus	oesophagus
20	chr6:37929400-37947800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:37929400-37953200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:37930200-37941600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:37930200-37942200	Weak transcription	HepG2	liver
24	chr6:37930400-37938200	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr6:37930400-37939400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr6:37930600-37941800	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr6:37930800-37939200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr6:37931000-37939000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:37931000-37939400	Weak transcription	Fetal Thymus	thymus
30	chr6:37932200-37936800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr6:37933800-37938400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr6:37933800-37938600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:37933800-37939000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:37934000-37939200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:37934200-37936600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:37934400-37939000	Weak transcription	Small Intestine	intestine
37	chr6:37934400-37939400	Weak transcription	HSMMtube	muscle
38	chr6:37934400-37940600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:37934400-37949800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:37934800-37947400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:37935000-37942400	Weak transcription	HSMM	muscle
42	chr6:37935000-37942400	Weak transcription	NHDF-Ad	bronchial
43	chr6:37935000-37947000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:37935200-37937600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:37935200-37939200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr6:37935200-37942400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:37935200-37942400	Weak transcription	A549	lung
48	chr6:37935200-37947000	Weak transcription	NHEK	skin
49	chr6:37936200-37936600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
50	chr6:37936200-37936600	Enhancers	Left Ventricle	heart

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