The 2.0 version of rSNPBase

Variant report

Variant rs73421902
Chromosome Location chr6:38122606-38122607
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:105 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:38084600-38124200 Weak transcription Hela-S3 cervix
2 chr6:38091400-38141800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
3 chr6:38103000-38127200 Weak transcription Colon Smooth Muscle Colon
4 chr6:38109200-38123000 Weak transcription Ovary ovary
5 chr6:38109200-38129000 Weak transcription Rectal Smooth Muscle rectum
6 chr6:38111800-38138200 Weak transcription Fetal Brain Female brain
7 chr6:38112400-38128400 Weak transcription Brain Germinal Matrix brain
8 chr6:38112400-38138200 Weak transcription Fetal Brain Male brain
9 chr6:38113000-38127800 Weak transcription H9 Cell Line embryonic stem cell
10 chr6:38113200-38134400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
11 chr6:38113200-38138000 Weak transcription iPS-15b Cell Line embryonic stem cell
12 chr6:38114400-38138200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
13 chr6:38114600-38123000 Weak transcription Brain Substantia Nigra brain
14 chr6:38114600-38123000 Weak transcription NH-A brain
15 chr6:38114600-38127200 Weak transcription HSMM muscle
16 chr6:38115200-38123200 Weak transcription Muscle Satellite Cultured Cells --
17 chr6:38115200-38123200 Weak transcription Brain Angular Gyrus brain
18 chr6:38115200-38123200 Weak transcription Brain Hippocampus Middle brain
19 chr6:38115800-38122800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
20 chr6:38116000-38123400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr6:38117200-38131800 Weak transcription Stomach Mucosa stomach
22 chr6:38117600-38123600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr6:38117600-38137200 Weak transcription HUES6 Cell Line embryonic stem cell
24 chr6:38118000-38123200 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
25 chr6:38118200-38122800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr6:38119000-38123200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr6:38119200-38123200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr6:38119400-38127800 Strong transcription Breast Myoepithelial Primary Cells Breast
29 chr6:38119600-38123000 Strong transcription Gastric stomach
30 chr6:38119600-38123400 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr6:38119800-38122800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
32 chr6:38119800-38123600 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr6:38119800-38129400 Weak transcription Brain Cingulate Gyrus brain
34 chr6:38119800-38134800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr6:38120200-38125600 Weak transcription Primary T regulatory cells fromperipheralblood blood
36 chr6:38120400-38132800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr6:38120600-38122800 Genic enhancers Fetal Muscle Leg muscle
38 chr6:38120600-38123200 Weak transcription Rectal Mucosa Donor 31 rectum
39 chr6:38120600-38123600 Enhancers Primary B cells from cord blood blood
40 chr6:38120600-38125400 Weak transcription Primary T cells from cord blood blood
41 chr6:38120800-38123200 Genic enhancers Fetal Muscle Trunk muscle
42 chr6:38120800-38123600 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
43 chr6:38120800-38125400 Enhancers Fetal Thymus thymus
44 chr6:38121000-38123200 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell
45 chr6:38121000-38123600 Genic enhancers Fetal Adrenal Gland Adrenal Gland
46 chr6:38121000-38125800 Weak transcription Rectal Mucosa Donor 29 rectum
47 chr6:38121000-38126200 Weak transcription GM12878-XiMat blood
48 chr6:38121000-38126400 Weak transcription NHEK skin
49 chr6:38121000-38159600 Weak transcription Primary T cells fromperipheralblood blood
50 chr6:38121200-38122800 Weak transcription Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015