Variant report

Variant	rs72851423
Chromosome Location	chr6:38323879-38323880
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38314373..38316447-chr6:38323843..38325764,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10947717	1.00[ASN][1000 genomes]
rs10947719	1.00[ASN][1000 genomes]
rs11544072	1.00[ASN][1000 genomes]
rs11751937	1.00[ASN][1000 genomes]
rs11755721	1.00[ASN][1000 genomes]
rs11760121	1.00[ASN][1000 genomes]
rs12202202	1.00[ASN][1000 genomes]
rs12202872	1.00[ASN][1000 genomes]
rs1931760	1.00[ASN][1000 genomes]
rs1931761	1.00[ASN][1000 genomes]
rs4336442	1.00[ASN][1000 genomes]
rs55731063	1.00[ASN][1000 genomes]
rs55902626	1.00[ASN][1000 genomes]
rs56020526	1.00[ASN][1000 genomes]
rs56021282	1.00[ASN][1000 genomes]
rs56030069	1.00[ASN][1000 genomes]
rs56341927	1.00[ASN][1000 genomes]
rs58418493	1.00[ASN][1000 genomes]
rs59693994	1.00[ASN][1000 genomes]
rs72849820	1.00[ASN][1000 genomes]
rs72851457	1.00[ASN][1000 genomes]
rs73421902	1.00[ASN][1000 genomes]
rs73423525	1.00[ASN][1000 genomes]
rs9369034	1.00[ASN][1000 genomes]
rs9462403	1.00[ASN][1000 genomes]
rs9462434	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv602957	chr6:38305770-38395874	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1032358	chr6:38323745-38415855	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38285000-38327800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:38301600-38324600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr6:38310800-38326000	Weak transcription	Lung	lung
4	chr6:38312000-38326600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:38313800-38325800	Weak transcription	Psoas Muscle	Psoas
6	chr6:38313800-38331200	Weak transcription	Primary T cells from cord blood	blood
7	chr6:38314800-38325800	Weak transcription	Right Atrium	heart
8	chr6:38315200-38325800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:38315800-38339000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:38318200-38324600	Weak transcription	Small Intestine	intestine
11	chr6:38319200-38325400	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:38319200-38325600	Weak transcription	Fetal Stomach	stomach
13	chr6:38319200-38327200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:38319200-38334200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:38320000-38325400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:38322600-38325200	Weak transcription	Primary B cells from cord blood	blood
17	chr6:38323000-38325000	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:38323000-38326800	Weak transcription	Fetal Brain Male	brain
19	chr6:38323200-38324800	Weak transcription	Brain Angular Gyrus	brain
20	chr6:38323200-38325400	Weak transcription	Brain Substantia Nigra	brain
21	chr6:38323200-38325400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr6:38323200-38328800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:38323200-38331800	Weak transcription	Adipose Nuclei	Adipose
24	chr6:38323400-38327400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:38323600-38325200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr6:38323600-38325400	Weak transcription	Brain Anterior Caudate	brain
27	chr6:38323600-38325400	Weak transcription	Ovary	ovary
28	chr6:38323600-38327000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr6:38323600-38330400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:38323800-38324000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:38323800-38324800	Enhancers	GM12878-XiMat	blood

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