Variant report

Variant	rs6918658
Chromosome Location	chr6:5717397-5717398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11243032	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13206042	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs34018278	0.93[ASN][1000 genomes]
rs4960131	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs6597160	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs6941373	0.83[JPT][hapmap]
rs7741438	0.83[JPT][hapmap]
rs9378440	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9392711	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9405866	0.83[CHB][hapmap];0.83[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6918658	SSR1	cis	parietal	SCAN
rs6918658	PIP5K1P1	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5707600-5724000	Weak transcription	Thymus	Thymus
2	chr6:5713400-5718200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:5713800-5723400	Weak transcription	Primary T cells from cord blood	blood
4	chr6:5714600-5723600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:5714800-5722800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:5715800-5718000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:5716600-5717600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr6:5716600-5717800	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr6:5716800-5717400	ZNF genes & repeats	Fetal Stomach	stomach
10	chr6:5716800-5717600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
11	chr6:5717000-5717400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:5717000-5717400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr6:5717000-5717600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:5717000-5717600	ZNF genes & repeats	Brain Substantia Nigra	brain
15	chr6:5717000-5717600	ZNF genes & repeats	Fetal Lung	lung
16	chr6:5717000-5717800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:5717200-5717600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:5717200-5717800	ZNF genes & repeats	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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