Variant report

Variant	rs9378440
Chromosome Location	chr6:5718369-5718370
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11243032	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13206042	0.96[ASN][1000 genomes]
rs34018278	0.91[ASN][1000 genomes]
rs4960131	0.98[ASN][1000 genomes]
rs6597160	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6918658	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9392711	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5707600-5724000	Weak transcription	Thymus	Thymus
2	chr6:5713800-5723400	Weak transcription	Primary T cells from cord blood	blood
3	chr6:5714600-5723600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:5714800-5722800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:5717400-5718400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:5717400-5729000	Weak transcription	Fetal Stomach	stomach
7	chr6:5717600-5718400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:5717600-5718800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:5717600-5729000	Weak transcription	Fetal Lung	lung
10	chr6:5717600-5729600	Weak transcription	Brain Substantia Nigra	brain
11	chr6:5717800-5723600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:5717800-5725600	Weak transcription	Fetal Intestine Small	intestine
13	chr6:5718000-5718600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:5718000-5729200	Weak transcription	NHEK	skin
15	chr6:5718200-5719600	Enhancers	Primary B cells from cord blood	blood
16	chr6:5718200-5720000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:5718200-5720000	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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