Variant report

Variant	rs6918886
Chromosome Location	chr6:166956895-166956896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13207398	0.92[ASN][1000 genomes]
rs2187909	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs3799631	0.90[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs6456091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6456092	0.95[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs763186	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7769210	0.90[ASN][1000 genomes]
rs9348147	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886941	chr6:166907173-166996991	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6918886	CCR6	cis	cerebellum	SCAN

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166930400-166957800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:166935400-166966400	Weak transcription	NH-A	brain
3	chr6:166944600-166957200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:166944600-166958600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:166947400-166969400	Weak transcription	Aorta	Aorta
6	chr6:166949800-166964800	Weak transcription	Fetal Intestine Small	intestine
7	chr6:166950200-166960600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:166950800-166958600	Weak transcription	NHDF-Ad	bronchial
9	chr6:166951800-166959000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:166952000-166957000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:166952400-166957200	Weak transcription	Fetal Brain Male	brain
12	chr6:166952400-166969000	Weak transcription	Psoas Muscle	Psoas
13	chr6:166953000-166957800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:166953000-166959000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:166953400-166957200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:166953400-166957600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr6:166953400-166964600	Weak transcription	Primary T cells from cord blood	blood
18	chr6:166953400-166967400	Weak transcription	Fetal Lung	lung
19	chr6:166954000-166959000	Enhancers	Fetal Muscle Leg	muscle
20	chr6:166954200-166958200	Enhancers	Fetal Muscle Trunk	muscle
21	chr6:166954200-166965000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:166954400-166957800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:166954400-166958800	Weak transcription	Fetal Brain Female	brain
24	chr6:166954400-166962000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:166954600-166958400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:166954600-166959000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:166954600-166959600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:166954800-166965000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr6:166955000-166957600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr6:166955000-166959200	Weak transcription	Brain Angular Gyrus	brain
31	chr6:166955000-166959400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:166955000-166967000	Weak transcription	Brain Substantia Nigra	brain
33	chr6:166955200-166962400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:166955200-166970600	Weak transcription	Pancreas	Pancrea
35	chr6:166955200-166970600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr6:166955400-166958400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:166955800-166957000	Weak transcription	Lung	lung
38	chr6:166955800-166957000	Enhancers	HUVEC	blood vessel
39	chr6:166955800-166957200	Enhancers	NHLF	lung
40	chr6:166955800-166959200	Weak transcription	Brain Germinal Matrix	brain
41	chr6:166956000-166957200	Weak transcription	Fetal Stomach	stomach
42	chr6:166956000-166957800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:166956000-166960200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr6:166956000-166962400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:166956000-166964000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:166956000-166966400	Weak transcription	Adipose Nuclei	Adipose
47	chr6:166956000-166966600	Weak transcription	Stomach Smooth Muscle	stomach
48	chr6:166956000-166967800	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr6:166956000-166969000	Weak transcription	Gastric	stomach
50	chr6:166956200-166957200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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