Variant report

Variant	rs6919437
Chromosome Location	chr6:150157997-150157998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150157068..150159142-chr6:150224629..150226824,2	MCF-7	breast:
2	chr6:150156036..150158963-chr6:150184147..150187311,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000216906	Chromatin interaction
ENSG00000268592	Chromatin interaction
ENSG00000120256	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11968879	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17078923	1.00[ASN][1000 genomes]
rs60226016	0.87[EUR][1000 genomes]
rs60328093	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60475279	1.00[ASN][1000 genomes]
rs60640690	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60981297	0.87[EUR][1000 genomes]
rs61292046	0.87[EUR][1000 genomes]
rs6899595	1.00[ASN][1000 genomes]
rs73612418	0.87[EUR][1000 genomes]
rs73612420	0.87[EUR][1000 genomes]
rs7744111	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745198	0.87[EUR][1000 genomes]
rs7753340	0.87[EUR][1000 genomes]
rs7762484	0.87[EUR][1000 genomes]
rs9478983	1.00[ASN][1000 genomes]
rs9478993	0.87[EUR][1000 genomes]
rs9478994	0.87[EUR][1000 genomes]
rs9478995	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv886763	chr6:150091219-150174507	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150073800-150182400	Weak transcription	Fetal Brain Male	brain
2	chr6:150088000-150160400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:150094400-150167200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:150105800-150176400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:150112600-150167200	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:150119000-150164000	Weak transcription	Right Ventricle	heart
7	chr6:150120000-150164600	Weak transcription	Fetal Kidney	kidney
8	chr6:150132800-150161800	Weak transcription	Fetal Lung	lung
9	chr6:150133200-150161200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:150133200-150161800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:150133200-150162000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:150135000-150161600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:150141400-150167200	Weak transcription	Right Atrium	heart
14	chr6:150143600-150161600	Weak transcription	Left Ventricle	heart
15	chr6:150146200-150167000	Weak transcription	Psoas Muscle	Psoas
16	chr6:150147800-150163600	Weak transcription	Fetal Brain Female	brain
17	chr6:150150600-150166400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:150151200-150161600	Weak transcription	Stomach Mucosa	stomach
19	chr6:150151800-150159000	Strong transcription	Placenta	Placenta
20	chr6:150152400-150165400	Weak transcription	HSMMtube	muscle
21	chr6:150152600-150158200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr6:150152600-150159000	Strong transcription	Fetal Stomach	stomach
23	chr6:150152600-150161600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:150152800-150159000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:150152800-150161000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:150152800-150161200	Weak transcription	NHDF-Ad	bronchial
27	chr6:150152800-150161600	Weak transcription	Pancreas	Pancrea
28	chr6:150152800-150161800	Weak transcription	HSMM	muscle
29	chr6:150152800-150172600	Weak transcription	Aorta	Aorta
30	chr6:150153000-150163600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:150153000-150167000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:150153000-150167800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:150153200-150161600	Weak transcription	Brain Substantia Nigra	brain
34	chr6:150153600-150159400	Strong transcription	Fetal Intestine Small	intestine
35	chr6:150154400-150158600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:150154800-150158800	Strong transcription	Hela-S3	cervix
37	chr6:150154800-150159000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:150155000-150158600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:150155200-150158600	Strong transcription	Adipose Nuclei	Adipose
40	chr6:150155200-150158600	Strong transcription	Brain Anterior Caudate	brain
41	chr6:150155400-150159000	Strong transcription	HepG2	liver
42	chr6:150155600-150158400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr6:150155600-150161200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:150155800-150158000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:150155800-150158400	Weak transcription	Brain Angular Gyrus	brain
46	chr6:150155800-150182600	Weak transcription	Dnd41	blood
47	chr6:150156000-150158800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr6:150156400-150158800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:150156400-150159200	Strong transcription	Esophagus	oesophagus
50	chr6:150156400-150161000	Weak transcription	Muscle Satellite Cultured Cells	--

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