Variant report

Variant	rs7753340
Chromosome Location	chr6:150177448-150177449
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150166972..150170448-chr6:150175876..150178840,3	K562	blood:
2	chr6:150166110..150169897-chr6:150177295..150181208,4	MCF-7	breast:
3	chr6:150171993..150174562-chr6:150174943..150177872,4	MCF-7	breast:
4	chr6:150176914..150179081-chr6:150198633..150200367,2	K562	blood:
5	chr6:150174462..150179151-chr6:150182047..150185746,5	K562	blood:

Variant related genes	Relation type
ENSG00000268592	Chromatin interaction
ENSG00000120256	Chromatin interaction
ENSG00000273132	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11961510	1.00[JPT][hapmap]
rs11961527	1.00[JPT][hapmap]
rs11963771	1.00[JPT][hapmap]
rs11966407	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11968728	1.00[JPT][hapmap]
rs11968879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs17078923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs17088269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3806983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs59026959	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59035385	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60226016	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60328093	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60981297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61292046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61745766	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs6919437	0.87[EUR][1000 genomes]
rs73610596	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612411	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612418	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612420	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs7745198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770995	1.00[JPT][hapmap]
rs9478983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs9478993	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9478994	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9478995	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688944	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150073800-150182400	Weak transcription	Fetal Brain Male	brain
2	chr6:150155800-150182600	Weak transcription	Dnd41	blood
3	chr6:150164400-150181800	Weak transcription	Brain Germinal Matrix	brain
4	chr6:150165000-150181800	Weak transcription	Fetal Brain Female	brain
5	chr6:150167800-150181400	Weak transcription	Right Atrium	heart
6	chr6:150168800-150182600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:150168800-150183400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:150169000-150181200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:150169200-150177800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:150169200-150183000	Weak transcription	Brain Substantia Nigra	brain
11	chr6:150169400-150183200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:150172600-150181600	Weak transcription	Brain Angular Gyrus	brain
13	chr6:150173000-150177800	Weak transcription	Psoas Muscle	Psoas
14	chr6:150173000-150181200	Weak transcription	Liver	Liver
15	chr6:150173000-150181600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:150173000-150184200	Weak transcription	Aorta	Aorta
17	chr6:150173200-150183200	Weak transcription	Ovary	ovary
18	chr6:150173400-150177800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr6:150173800-150181800	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:150174000-150181600	Weak transcription	Brain Anterior Caudate	brain
21	chr6:150174200-150181600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:150174200-150181600	Weak transcription	Fetal Stomach	stomach
23	chr6:150174200-150181800	Weak transcription	Adipose Nuclei	Adipose
24	chr6:150174200-150182600	Weak transcription	Fetal Muscle Trunk	muscle
25	chr6:150175200-150177800	Enhancers	HepG2	liver
26	chr6:150175200-150178600	Enhancers	NHDF-Ad	bronchial
27	chr6:150175200-150179000	Enhancers	HSMM	muscle
28	chr6:150175400-150178200	Enhancers	Placenta Amnion	Placenta Amnion
29	chr6:150175600-150178200	Flanking Active TSS	NHEK	skin
30	chr6:150175600-150178800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:150175600-150178800	Flanking Active TSS	Osteobl	bone
32	chr6:150175800-150177600	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr6:150175800-150178000	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr6:150175800-150178200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:150175800-150178800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
36	chr6:150175800-150178800	Flanking Active TSS	HUVEC	blood vessel
37	chr6:150176000-150178000	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr6:150176000-150181800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr6:150176200-150177800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:150176200-150177800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr6:150176200-150177800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:150176200-150181200	Weak transcription	Esophagus	oesophagus
43	chr6:150176200-150183200	Weak transcription	Fetal Intestine Large	intestine
44	chr6:150176400-150177800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:150176400-150177800	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr6:150176400-150182000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr6:150176600-150177600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:150176600-150178800	Weak transcription	Small Intestine	intestine
49	chr6:150176600-150180600	Weak transcription	Gastric	stomach
50	chr6:150176600-150181400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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