Variant report

Variant	rs11961510
Chromosome Location	chr6:150261468-150261469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr6:150261088-150261844	HEK293-T-REx	kidney:	n/a	chr6:150261419-150261428 chr6:150261355-150261364
2	SUZ12	chr6:150261103-150262100	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:150255655..150257664-chr6:150259479..150262477,4	K562	blood:
2	chr6:150255165..150257260-chr6:150258635..150261924,3	MCF-7	breast:
3	chr6:150254783..150257862-chr6:150259479..150262603,4	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ULBP2-1	chr6:150261044-150262631	XLOC_005501
2	lnc-ULBP2-1	chr6:150261044-150262631	XLOC_005501
3	lnc-ULBP2-1	chr6:150261044-150262766	NONHSAT115525

No data

Variant related genes	Relation type
ULBP2	TF binding region
ENSG00000216621	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11961527	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963771	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968728	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968879	1.00[JPT][hapmap]
rs17078923	1.00[JPT][hapmap]
rs4394226	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4518509	1.00[ASN][1000 genomes]
rs55906906	1.00[EUR][1000 genomes]
rs55923313	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56228548	1.00[EUR][1000 genomes]
rs57907635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61034772	1.00[EUR][1000 genomes]
rs6557197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899595	1.00[JPT][hapmap]
rs6918946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930105	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779704	1.00[EUR][1000 genomes]
rs73779705	1.00[EUR][1000 genomes]
rs73782154	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73782157	1.00[EUR][1000 genomes]
rs73782159	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73782166	1.00[EUR][1000 genomes]
rs73782167	1.00[EUR][1000 genomes]
rs73782170	1.00[EUR][1000 genomes]
rs7744111	1.00[JPT][hapmap]
rs7745198	1.00[JPT][hapmap]
rs7753340	1.00[JPT][hapmap]
rs7756662	1.00[EUR][1000 genomes]
rs7766021	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770995	1.00[JPT][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9478983	1.00[JPT][hapmap]
rs9688944	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv3332714	chr6:150259037-150275045	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv970173	chr6:150261095-150262064	Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150260200-150262600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:150260400-150262200	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
3	chr6:150260400-150262400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
4	chr6:150260400-150262600	Weak transcription	Right Atrium	heart
5	chr6:150260400-150262600	Weak transcription	HMEC	breast
6	chr6:150260600-150262200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
7	chr6:150260600-150262400	Weak transcription	Pancreas	Pancrea
8	chr6:150260600-150262400	Weak transcription	Right Ventricle	heart
9	chr6:150260800-150262400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:150261400-150261600	Bivalent Enhancer	Colonic Mucosa	Colon
11	chr6:150261400-150262400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr6:150261400-150264000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links