Variant report

Variant	rs6930105
Chromosome Location	chr6:150260157-150260158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:86)
CpG islands
(count:61)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:86 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:150259842-150260886	H1-neurons	neurons:	n/a	n/a
2	POU2F2	chr6:150259634-150260290	GM12878	blood:	n/a	n/a
3	ESRRA	chr6:150259409-150261022	GM12878	blood:	n/a	n/a
4	MAX	chr6:150259494-150260357	MCF-7	breast:	n/a	n/a
5	MAX	chr6:150259478-150260211	A549	lung:	n/a	n/a
6	STAT5A	chr6:150259607-150260650	GM12878	blood:	n/a	chr6:150260046-150260057 chr6:150260395-150260403
7	EP300	chr6:150259897-150260370	GM12878	blood:	n/a	n/a
8	RELA	chr6:150259888-150260347	GM10847	blood:	n/a	n/a
9	MTA3	chr6:150259775-150260314	GM12878	blood:	n/a	n/a
10	EP300	chr6:150259723-150260391	GM12878	blood:	n/a	n/a
11	RELA	chr6:150259874-150260309	GM18505	blood:	n/a	n/a
12	FOXM1	chr6:150259807-150260381	GM12878	blood:	n/a	n/a
13	SP1	chr6:150259854-150260342	GM12878	blood:	n/a	chr6:150260201-150260210
14	NFATC1	chr6:150259834-150260298	GM12878	blood:	n/a	n/a
15	MTA3	chr6:150259483-150260474	GM12878	blood:	n/a	n/a
16	IRF4	chr6:150259824-150260307	GM12878	blood:	n/a	n/a
17	TCF3	chr6:150259487-150260386	GM12878	blood:	n/a	chr6:150260307-150260320
18	PAX5	chr6:150259724-150260282	GM12878	blood:	n/a	n/a
19	ZEB1	chr6:150260019-150260410	GM12878	blood:	n/a	chr6:150260305-150260316 chr6:150260311-150260319 chr6:150260050-150260058
20	PML	chr6:150259565-150260502	GM12878	blood:	n/a	n/a
21	POLR2A	chr6:150259567-150260354	GM12892	blood:	n/a	n/a
22	RELA	chr6:150259779-150260326	GM19193	blood:	n/a	n/a
23	NFIC	chr6:150260105-150260559	ECC-1	luminal epithelium:	n/a	n/a
24	ZNF143	chr6:150259756-150260374	GM12878	blood:	n/a	n/a
25	POLR2A	chr6:150259780-150260553	GM12878	blood:	n/a	n/a
26	RELA	chr6:150259786-150260329	GM12878	blood:	n/a	n/a
27	ATF2	chr6:150259804-150260315	GM12878	blood:	n/a	n/a
28	TCF12	chr6:150259996-150260304	GM12878	blood:	n/a	n/a
29	MXI1	chr6:150259664-150260350	GM12878	blood:	n/a	n/a
30	POLR2A	chr6:150259843-150260583	H1-neurons	neurons:	n/a	n/a
31	BATF	chr6:150259890-150260217	GM12878	blood:	n/a	n/a
32	E2F6	chr6:150260129-150260236	K562	blood:	n/a	n/a
33	E2F6	chr6:150259485-150260203	A549	lung:	n/a	chr6:150259811-150259821
34	STAT1	chr6:150259816-150260284	GM12878	blood:	n/a	chr6:150260046-150260057
35	EP300	chr6:150259648-150260398	GM12878	blood:	n/a	n/a
36	POLR2A	chr6:150259741-150260261	GM12891	blood:	n/a	n/a
37	CHD2	chr6:150259732-150260318	GM12878	blood:	n/a	n/a
38	YY1	chr6:150259758-150260308	GM12878	blood:	n/a	n/a
39	SUZ12	chr6:150259426-150261085	NT2-D1	testis:	n/a	n/a
40	EP300	chr6:150259887-150260320	GM12878	blood:	n/a	n/a
41	BCL3	chr6:150259901-150260245	GM12878	blood:	n/a	n/a
42	PAX5	chr6:150259909-150260276	GM12878	blood:	n/a	n/a
43	CEBPB	chr6:150259875-150260421	GM12878	blood:	n/a	n/a
44	ZEB1	chr6:150260117-150260294	GM12878	blood:	n/a	n/a
45	MAZ	chr6:150259724-150260346	GM12878	blood:	n/a	n/a
46	MAX	chr6:150259610-150260406	GM12878	blood:	n/a	n/a
47	STAT5A	chr6:150259853-150260302	GM12878	blood:	n/a	chr6:150260046-150260057
48	BCLAF1	chr6:150259802-150260312	GM12878	blood:	n/a	n/a
49	NFIC	chr6:150259886-150260308	GM12878	blood:	n/a	n/a
50	SP1	chr6:150259623-150260348	GM12878	blood:	n/a	chr6:150259674-150259688 chr6:150260201-150260210

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:150260156-150260206	AG10803	skin:	n/a
2	chr6:150260156-150260206	GM19239	blood:	n/a
3	chr6:150260156-150260206	HEEpiC	esophagus:	n/a
4	chr6:150260156-150260206	GM12878	blood:	n/a
5	chr6:150260156-150260206	HEK293	kidney:	embryo
6	chr6:150260156-150260206	PFSK-1	brain:	n/a
7	chr6:150260156-150260206	H1-hESC	embryonic stem cell:	embryo
8	chr6:150260156-150260206	SK-N-SH_RA	brain:	n/a
9	chr6:150260156-150260206	PANC-1	pancreas:	n/a
10	chr6:150260156-150260206	Jurkat	blood:	n/a
11	chr6:150260156-150260206	T-47D	breast:	n/a
12	chr6:150260156-150260206	NH-A	brain:	n/a
13	chr6:150260156-150260206	GM12892	blood:	n/a
14	chr6:150260156-150260206	GM06990	blood:	n/a
15	chr6:150260156-150260206	GM12891	blood:	n/a
16	chr6:150260156-150260206	HPAEpiC	pulmonary alveolar:	n/a
17	chr6:150260156-150260206	SKMC	muscle:	n/a
18	chr6:150260156-150260206	A549	lung:	n/a
19	chr6:150260156-150260206	ovcar-3	ovarian:	n/a
20	chr6:150260156-150260206	HMEC	breast:	n/a
21	chr6:150260156-150260206	U87	brain:	n/a
22	chr6:150260156-150260206	NHBE	bronchial:	n/a
23	chr6:150260156-150260206	Hela-S3	cervix:	n/a
24	chr6:150260156-150260206	MCF-7	breast:	n/a
25	chr6:150260156-150260206	HRCEpiC	kidney:	n/a
26	chr6:150260156-150260206	RPTEC	kidney:	n/a
27	chr6:150260156-150260206	LNCaP	prostate:	n/a
28	chr6:150260156-150260206	AG09309	skin:	n/a
29	chr6:150260156-150260206	Hepatocyte	liver:	n/a
30	chr6:150260156-150260206	AG04449	skin:	fetal
31	chr6:150260156-150260206	AG04450	lung:	fetal
32	chr6:150260156-150260206	SK-N-MC	brain:	n/a
33	chr6:150260156-150260206	AG09319	gingival:	n/a
34	chr6:150260156-150260206	K562	blood:	n/a
35	chr6:150260156-150260206	HL-60	blood:	n/a
36	chr6:150260156-150260206	NHDF-neo	bronchial:	n/a
37	chr6:150260156-150260206	HRPEpiC	eye:	n/a
38	chr6:150260156-150260206	NT2-D1	testis:	n/a
39	chr6:150260156-150260206	ProgFib	skin:	n/a
40	chr6:150260156-150260206	SAEC	small airway:	n/a
41	chr6:150260156-150260206	BE2_C	brain:	n/a
42	chr6:150260156-150260206	HUVEC	blood vessel:	n/a
43	chr6:150260156-150260206	PrEC	prostate:	n/a
44	chr6:150260156-150260206	BJ	skin:	n/a
45	chr6:150260156-150260206	SK-N-SH	brain:	n/a
46	chr6:150260156-150260206	HCT-116	colon:	n/a
47	chr6:150260156-150260206	HRE	kidney:	n/a
48	chr6:150260156-150260206	HCPEpiC	choroid plexus:	n/a
49	chr6:150260156-150260206	HIPEpiC	eye:	n/a
50	chr6:150260156-150260206	HAEpiC	amniotic membrane:	n/a

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:150258514..150260378-chr6:150337573..150339969,2	MCF-7	breast:
2	chr6:150255655..150257664-chr6:150259479..150262477,4	K562	blood:
3	chr6:149846576..149848106-chr6:150258402..150260712,2	K562	blood:
4	chr6:150255165..150257260-chr6:150258635..150261924,3	MCF-7	breast:
5	chr6:150254783..150257862-chr6:150259479..150262603,4	K562	blood:

No data

Variant related genes	Relation type
ULBP2	TF binding region
ULBP2	CpG island
ENSG00000216621	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11961510	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961527	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963771	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968728	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4394226	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4518509	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55906906	1.00[EUR][1000 genomes]
rs55923313	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56228548	1.00[EUR][1000 genomes]
rs57907635	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61034772	1.00[EUR][1000 genomes]
rs6557197	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918946	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779704	1.00[EUR][1000 genomes]
rs73779705	1.00[EUR][1000 genomes]
rs73779713	0.83[AMR][1000 genomes]
rs73779714	0.83[AMR][1000 genomes]
rs73782154	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73782155	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782157	1.00[EUR][1000 genomes]
rs73782159	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73782166	1.00[EUR][1000 genomes]
rs73782167	1.00[EUR][1000 genomes]
rs73782170	1.00[EUR][1000 genomes]
rs7756662	1.00[EUR][1000 genomes]
rs7766021	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770995	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv3332714	chr6:150259037-150275045	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150259400-150260200	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:150259400-150260200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr6:150259400-150260200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:150259400-150260200	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
5	chr6:150259400-150260200	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:150259400-150260200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
7	chr6:150259400-150260200	Flanking Bivalent TSS/Enh	Placenta	Placenta
8	chr6:150259400-150260200	Active TSS	Hela-S3	cervix
9	chr6:150259400-150260200	Flanking Active TSS	HMEC	breast
10	chr6:150259400-150260400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr6:150259400-150260400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
12	chr6:150259400-150260400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
13	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
15	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
16	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
17	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
18	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
19	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
25	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
26	chr6:150259400-150260400	Bivalent Enhancer	Fetal Heart	heart
27	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
28	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
29	chr6:150259400-150260400	Enhancers	Spleen	Spleen
30	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	HepG2	liver
31	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
32	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Osteobl	bone
33	chr6:150259400-150260600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
34	chr6:150259400-150260600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:150259400-150260800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
36	chr6:150259400-150260800	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:150259400-150260800	Bivalent Enhancer	Fetal Lung	lung
38	chr6:150259600-150260200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
39	chr6:150259600-150260200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:150259600-150260200	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
41	chr6:150259600-150260200	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
42	chr6:150259600-150260200	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:150259600-150260200	Flanking Bivalent TSS/Enh	Primary T killer naive cells fromperipheralblood	blood
44	chr6:150259600-150260200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:150259600-150260200	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
46	chr6:150259600-150260200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
47	chr6:150259600-150260200	Flanking Bivalent TSS/Enh	Brain Substantia Nigra	brain
48	chr6:150259600-150260200	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
49	chr6:150259600-150260200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
50	chr6:150259600-150260200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle

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