Variant report

Variant	rs4394226
Chromosome Location	chr6:150257360-150257361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ULBP2-2	chr6:150256604-150257449	NONHSAT115522
2	lnc-ULBP2-2	chr6:150257101-150257464	NONHSAT115524

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11961510	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961527	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963771	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968728	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968879	1.00[JPT][hapmap]
rs17078923	1.00[JPT][hapmap]
rs4518509	1.00[ASN][1000 genomes]
rs55906906	1.00[EUR][1000 genomes]
rs55923313	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56228548	1.00[EUR][1000 genomes]
rs57907635	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61034772	1.00[EUR][1000 genomes]
rs6557197	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899595	1.00[JPT][hapmap]
rs6918946	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930105	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779704	1.00[EUR][1000 genomes]
rs73779705	1.00[EUR][1000 genomes]
rs73782154	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73782157	1.00[EUR][1000 genomes]
rs73782159	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73782166	1.00[EUR][1000 genomes]
rs73782167	1.00[EUR][1000 genomes]
rs73782170	1.00[EUR][1000 genomes]
rs7744111	1.00[JPT][hapmap]
rs7745198	1.00[JPT][hapmap]
rs7753340	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7756662	1.00[EUR][1000 genomes]
rs7766021	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770995	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9478983	1.00[JPT][hapmap]
rs9688944	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150256800-150259400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:150257000-150258000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:150257200-150257600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived

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