Variant report

Variant	rs73782159
Chromosome Location	chr6:150265208-150265209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11961510	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961527	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963771	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968728	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4394226	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4518509	1.00[ASN][1000 genomes]
rs55906906	1.00[EUR][1000 genomes]
rs55923313	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56228548	1.00[EUR][1000 genomes]
rs57907635	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61034772	1.00[EUR][1000 genomes]
rs6557197	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918946	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930105	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779704	1.00[EUR][1000 genomes]
rs73779705	1.00[EUR][1000 genomes]
rs73782154	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73782157	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73782166	1.00[EUR][1000 genomes]
rs73782167	1.00[EUR][1000 genomes]
rs73782170	1.00[EUR][1000 genomes]
rs7756662	1.00[EUR][1000 genomes]
rs7766021	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770995	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv3332714	chr6:150259037-150275045	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv969456	chr6:150263659-150269861	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3391591	chr6:150264703-150265789	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150263600-150267800	Weak transcription	Lung	lung
2	chr6:150263800-150269600	Weak transcription	HSMMtube	muscle
3	chr6:150263800-150271000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:150263800-150271600	Weak transcription	NHEK	skin
5	chr6:150264000-150269200	Weak transcription	Osteobl	bone
6	chr6:150264000-150270800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:150264000-150271800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:150264000-150272000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:150264000-150274600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:150264200-150271400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:150264200-150271800	Weak transcription	HSMM	muscle
12	chr6:150264400-150274800	Weak transcription	HMEC	breast
13	chr6:150264800-150269200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:150265000-150267600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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