Variant report

Variant	rs73782155
Chromosome Location	chr6:150260931-150260932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4518509	0.85[AMR][1000 genomes]
rs6930105	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779713	0.83[AMR][1000 genomes]
rs73779714	0.83[AMR][1000 genomes]
rs73782152	0.90[AFR][1000 genomes]
rs73782154	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv3332714	chr6:150259037-150275045	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150260200-150262600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:150260400-150261000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:150260400-150262200	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
4	chr6:150260400-150262400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
5	chr6:150260400-150262600	Weak transcription	Right Atrium	heart
6	chr6:150260400-150262600	Weak transcription	HMEC	breast
7	chr6:150260600-150261000	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
8	chr6:150260600-150262200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
9	chr6:150260600-150262400	Weak transcription	Pancreas	Pancrea
10	chr6:150260600-150262400	Weak transcription	Right Ventricle	heart
11	chr6:150260800-150262400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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