Variant report

Variant	rs59035385
Chromosome Location	chr6:150173871-150173872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17078923	1.00[EUR][1000 genomes]
rs59026959	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60226016	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60328093	0.86[EUR][1000 genomes]
rs60475279	1.00[AMR][1000 genomes]
rs60640690	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60981297	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61292046	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61745766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899595	1.00[EUR][1000 genomes]
rs73610596	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612418	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612420	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745198	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753340	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762484	0.86[EUR][1000 genomes]
rs9478983	1.00[EUR][1000 genomes]
rs9478993	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9478994	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9478995	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv886763	chr6:150091219-150174507	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150073800-150182400	Weak transcription	Fetal Brain Male	brain
2	chr6:150105800-150176400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:150155800-150182600	Weak transcription	Dnd41	blood
4	chr6:150158800-150176400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:150162200-150175800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:150162600-150177200	Weak transcription	Fetal Lung	lung
7	chr6:150163600-150175800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:150164400-150181800	Weak transcription	Brain Germinal Matrix	brain
9	chr6:150165000-150181800	Weak transcription	Fetal Brain Female	brain
10	chr6:150167800-150181400	Weak transcription	Right Atrium	heart
11	chr6:150168600-150175200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:150168600-150175200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:150168600-150175200	Weak transcription	Pancreas	Pancrea
14	chr6:150168800-150175800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:150168800-150182600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:150168800-150183400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:150169000-150175200	Weak transcription	Gastric	stomach
18	chr6:150169000-150181200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:150169200-150177800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:150169200-150183000	Weak transcription	Brain Substantia Nigra	brain
21	chr6:150169400-150175800	Weak transcription	Fetal Intestine Large	intestine
22	chr6:150169400-150175800	Weak transcription	HSMMtube	muscle
23	chr6:150169400-150176000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:150169400-150176000	Weak transcription	Colon Smooth Muscle	Colon
25	chr6:150169400-150183200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr6:150169600-150174200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:150171000-150174200	Strong transcription	Stomach Smooth Muscle	stomach
28	chr6:150171000-150174400	Strong transcription	Fetal Muscle Leg	muscle
29	chr6:150171200-150174200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:150171200-150174400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:150171400-150174000	Strong transcription	Brain Anterior Caudate	brain
32	chr6:150171800-150174200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:150172000-150174200	Strong transcription	Adipose Nuclei	Adipose
34	chr6:150172000-150174200	Strong transcription	Duodenum Mucosa	Duodenum
35	chr6:150172000-150174200	Strong transcription	Fetal Stomach	stomach
36	chr6:150172000-150174200	Genic enhancers	NHDF-Ad	bronchial
37	chr6:150172200-150174000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:150172200-150174400	Strong transcription	Hela-S3	cervix
39	chr6:150172200-150174600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:150172200-150174600	Enhancers	NH-A	brain
41	chr6:150172400-150174000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:150172400-150174200	Enhancers	Muscle Satellite Cultured Cells	--
43	chr6:150172400-150175600	Enhancers	Osteobl	bone
44	chr6:150172600-150174200	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr6:150172600-150174200	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr6:150172600-150176000	Enhancers	Primary B cells from peripheral blood	blood
47	chr6:150172600-150177200	Enhancers	Placenta	Placenta
48	chr6:150172600-150181600	Weak transcription	Brain Angular Gyrus	brain
49	chr6:150172800-150174000	Enhancers	Primary hematopoietic stem cells	blood
50	chr6:150172800-150174200	Enhancers	Primary B cells from cord blood	blood

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