Variant report

Variant	rs59026959
Chromosome Location	chr6:150172632-150172633
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:150172555-150172976	A549	lung:	n/a	n/a
2	CEBPB	chr6:150172569-150172960	IMR90	lung:	n/a	n/a
3	FOS	chr6:150172624-150172944	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr6:150172608-150172944	MCF10A-Er-Src	breast:	n/a	n/a
5	CEBPB	chr6:150172626-150172905	A549	lung:	n/a	n/a
6	FOS	chr6:150172607-150172943	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr6:150172592-150172944	MCF10A-Er-Src	breast:	n/a	n/a
8	TCF12	chr6:150171996-150173049	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150164239..150168667-chr6:150168889..150173398,4	K562	blood:

Variant related genes	Relation type
ENSG00000273132	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17078923	1.00[EUR][1000 genomes]
rs59035385	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60226016	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60328093	0.86[EUR][1000 genomes]
rs60640690	0.86[EUR][1000 genomes]
rs60981297	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61292046	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61745766	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899595	1.00[EUR][1000 genomes]
rs73610596	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612411	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612418	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612420	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745198	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753340	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762484	0.86[EUR][1000 genomes]
rs9478983	1.00[EUR][1000 genomes]
rs9478993	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9478994	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9478995	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv886763	chr6:150091219-150174507	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150073800-150182400	Weak transcription	Fetal Brain Male	brain
2	chr6:150105800-150176400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:150155800-150182600	Weak transcription	Dnd41	blood
4	chr6:150158800-150176400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:150159200-150172800	Weak transcription	Spleen	Spleen
6	chr6:150162200-150175800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:150162600-150177200	Weak transcription	Fetal Lung	lung
8	chr6:150163600-150175800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:150164400-150181800	Weak transcription	Brain Germinal Matrix	brain
10	chr6:150165000-150181800	Weak transcription	Fetal Brain Female	brain
11	chr6:150167800-150181400	Weak transcription	Right Atrium	heart
12	chr6:150168600-150172800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:150168600-150172800	Weak transcription	Left Ventricle	heart
14	chr6:150168600-150172800	Weak transcription	Psoas Muscle	Psoas
15	chr6:150168600-150173400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:150168600-150173600	Weak transcription	Esophagus	oesophagus
17	chr6:150168600-150175200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:150168600-150175200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:150168600-150175200	Weak transcription	Pancreas	Pancrea
20	chr6:150168800-150173200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:150168800-150173400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:150168800-150175800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr6:150168800-150182600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:150168800-150183400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr6:150169000-150175200	Weak transcription	Gastric	stomach
26	chr6:150169000-150181200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:150169200-150172800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:150169200-150177800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:150169200-150183000	Weak transcription	Brain Substantia Nigra	brain
30	chr6:150169400-150172800	Weak transcription	Fetal Intestine Small	intestine
31	chr6:150169400-150172800	Weak transcription	HMEC	breast
32	chr6:150169400-150173600	Weak transcription	Stomach Mucosa	stomach
33	chr6:150169400-150175800	Weak transcription	Fetal Intestine Large	intestine
34	chr6:150169400-150175800	Weak transcription	HSMMtube	muscle
35	chr6:150169400-150176000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:150169400-150176000	Weak transcription	Colon Smooth Muscle	Colon
37	chr6:150169400-150183200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr6:150169600-150172800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:150169600-150173200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:150169600-150174200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:150170200-150173400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr6:150171000-150172800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:150171000-150173200	Strong transcription	HepG2	liver
44	chr6:150171000-150174200	Strong transcription	Stomach Smooth Muscle	stomach
45	chr6:150171000-150174400	Strong transcription	Fetal Muscle Leg	muscle
46	chr6:150171200-150174200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:150171200-150174400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:150171400-150172800	Weak transcription	Lung	lung
49	chr6:150171400-150174000	Strong transcription	Brain Anterior Caudate	brain
50	chr6:150171800-150173000	Strong transcription	Duodenum Smooth Muscle	Duodenum

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