Variant report

Variant	rs6919772
Chromosome Location	chr6:167105415-167105416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:167105343..167108325-chr6:167108497..167110048,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16899079	1.00[CEU][hapmap]
rs16899149	1.00[CEU][hapmap]
rs4473841	1.00[CEU][hapmap]
rs6918950	1.00[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs73261012	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv432984	chr6:167018915-167181613	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1020888	chr6:167059455-167136562	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv538540	chr6:167059455-167136562	Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2754464	chr6:167059528-167130749	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv482478	chr6:167071366-167265821	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
10	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167096800-167111600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr6:167101600-167106400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:167102200-167116000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:167102200-167116600	Weak transcription	Brain Anterior Caudate	brain
5	chr6:167102200-167117600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:167102600-167108800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:167103000-167107000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:167103400-167105600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:167103400-167105600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:167103400-167106000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:167103400-167106600	Enhancers	Fetal Heart	heart
12	chr6:167104000-167105600	Enhancers	Placenta	Placenta
13	chr6:167104000-167105600	Enhancers	HMEC	breast
14	chr6:167104000-167106000	Enhancers	Hela-S3	cervix
15	chr6:167104000-167108600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:167104200-167105600	Enhancers	Lung	lung
17	chr6:167104200-167105800	Enhancers	Psoas Muscle	Psoas
18	chr6:167104200-167106800	Enhancers	Left Ventricle	heart
19	chr6:167104400-167106000	Enhancers	Brain Germinal Matrix	brain
20	chr6:167104400-167106600	Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr6:167104400-167106600	Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr6:167104600-167105600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr6:167104600-167105600	Enhancers	Fetal Muscle Trunk	muscle
24	chr6:167104600-167105600	Enhancers	NH-A	brain
25	chr6:167104600-167105800	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr6:167104600-167106000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:167104800-167105600	Enhancers	Brain Hippocampus Middle	brain
28	chr6:167104800-167105600	Enhancers	Placenta Amnion	Placenta Amnion
29	chr6:167104800-167105600	Enhancers	Right Atrium	heart
30	chr6:167104800-167105800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:167104800-167105800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:167104800-167106000	Bivalent Enhancer	Fetal Stomach	stomach
33	chr6:167105000-167105600	Enhancers	Adipose Nuclei	Adipose
34	chr6:167105000-167105600	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr6:167105000-167105600	Enhancers	Right Ventricle	heart
36	chr6:167105000-167107000	Enhancers	Ovary	ovary
37	chr6:167105000-167107200	Enhancers	Fetal Muscle Leg	muscle
38	chr6:167105200-167106000	Enhancers	Stomach Smooth Muscle	stomach
39	chr6:167105200-167107600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr6:167105400-167105600	Flanking Active TSS	HUVEC	blood vessel
41	chr6:167105400-167105800	Enhancers	Primary hematopoietic stem cells	blood
42	chr6:167105400-167106400	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links