Variant report

Variant	rs16899149
Chromosome Location	chr6:166968355-166968356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166959907..166962150-chr6:166966800..166968664,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16899079	1.00[CEU][hapmap]
rs3778408	1.00[AMR][1000 genomes]
rs4473841	1.00[CEU][hapmap]
rs6906990	1.00[CEU][hapmap]
rs6918950	1.00[CEU][hapmap]
rs6919772	1.00[CEU][hapmap]
rs7742787	1.00[AMR][1000 genomes]
rs9366027	1.00[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886941	chr6:166907173-166996991	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv5592	chr6:166958317-167002951	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166947400-166969400	Weak transcription	Aorta	Aorta
2	chr6:166952400-166969000	Weak transcription	Psoas Muscle	Psoas
3	chr6:166955200-166970600	Weak transcription	Pancreas	Pancrea
4	chr6:166955200-166970600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:166956000-166969000	Weak transcription	Gastric	stomach
6	chr6:166957800-166968800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:166960000-166972800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:166961200-166970400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:166963400-166968600	Weak transcription	Esophagus	oesophagus
10	chr6:166964800-166968600	Enhancers	Brain Germinal Matrix	brain
11	chr6:166964800-166972000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:166965000-166969200	Enhancers	Fetal Brain Male	brain
13	chr6:166965600-166971000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:166965800-166968600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:166965800-166972400	Enhancers	Fetal Muscle Leg	muscle
16	chr6:166966000-166968600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:166966000-166969800	Enhancers	Fetal Stomach	stomach
18	chr6:166966000-166973600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:166966000-166974200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:166966200-166968800	Enhancers	Lung	lung
21	chr6:166966200-166969600	Enhancers	HSMM	muscle
22	chr6:166966200-166970000	Enhancers	Brain Hippocampus Middle	brain
23	chr6:166966200-166971200	Enhancers	Left Ventricle	heart
24	chr6:166966200-166978000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:166966400-166968400	Enhancers	HMEC	breast
26	chr6:166966400-166968800	Enhancers	NHLF	lung
27	chr6:166966400-166970400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:166966400-166970800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:166966600-166968400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:166966600-166969800	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr6:166966600-166970000	Enhancers	Brain Anterior Caudate	brain
32	chr6:166966600-166970200	Enhancers	Right Ventricle	heart
33	chr6:166966600-166970800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr6:166966800-166970400	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr6:166967000-166969000	Enhancers	Brain Substantia Nigra	brain
36	chr6:166967000-166969600	Weak transcription	Stomach Smooth Muscle	stomach
37	chr6:166967000-166971200	Enhancers	Brain Angular Gyrus	brain
38	chr6:166967200-166968400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr6:166967200-166970000	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr6:166967400-166968800	Enhancers	Ovary	ovary
41	chr6:166967400-166969200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:166967400-166969400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:166967400-166969800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:166967600-166968400	Enhancers	HSMMtube	muscle
45	chr6:166967600-166968400	Enhancers	Osteobl	bone
46	chr6:166967600-166968600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr6:166967600-166969400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr6:166967600-166969400	Enhancers	Fetal Heart	heart
49	chr6:166967600-166970400	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr6:166967600-166970600	Enhancers	HUVEC	blood vessel

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