Variant report

Variant	rs7742787
Chromosome Location	chr6:166891506-166891507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16899149	1.00[AMR][1000 genomes]
rs3778408	1.00[AMR][1000 genomes]
rs7745720	1.00[YRI][hapmap];0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886937	chr6:166830696-166922813	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886938	chr6:166859725-166904398	Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv886939	chr6:166859725-166922813	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv886940	chr6:166881023-166895934	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv528806	chr6:166884765-166892969	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv522905	chr6:166884765-166895934	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7742787	MEST	trans	lymphoblastoid	seeQTL

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166808200-166911800	Weak transcription	Psoas Muscle	Psoas
2	chr6:166824000-166901400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:166862400-166900600	Weak transcription	Primary T cells from cord blood	blood
4	chr6:166862400-166920600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:166863600-166900200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:166863600-166902000	Weak transcription	Small Intestine	intestine
7	chr6:166864800-166899800	Weak transcription	Esophagus	oesophagus
8	chr6:166867400-166892800	Weak transcription	Fetal Brain Male	brain
9	chr6:166867600-166900000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:166870400-166898400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:166871000-166901400	Weak transcription	Stomach Mucosa	stomach
12	chr6:166872000-166900400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:166872200-166900400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:166873000-166902800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:166874800-166903000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:166875000-166900800	Weak transcription	Fetal Heart	heart
17	chr6:166875800-166894000	Strong transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:166876000-166901400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr6:166877200-166904400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:166877200-166908800	Weak transcription	Colonic Mucosa	Colon
21	chr6:166878200-166902000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:166879000-166900600	Weak transcription	Primary B cells from cord blood	blood
23	chr6:166880200-166892200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:166880200-166900000	Weak transcription	Fetal Intestine Large	intestine
25	chr6:166880400-166900000	Weak transcription	Fetal Lung	lung
26	chr6:166880600-166895800	Weak transcription	NHDF-Ad	bronchial
27	chr6:166880600-166899800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr6:166880800-166893600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:166880800-166904400	Weak transcription	NH-A	brain
30	chr6:166881400-166904400	Weak transcription	Fetal Kidney	kidney
31	chr6:166883000-166893000	Weak transcription	Osteobl	bone
32	chr6:166883400-166892000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:166883400-166892200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:166883400-166898000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr6:166883400-166901400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:166883600-166898800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:166883800-166891600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr6:166883800-166891800	Weak transcription	Brain Substantia Nigra	brain
39	chr6:166883800-166892000	Weak transcription	Brain Angular Gyrus	brain
40	chr6:166883800-166892200	Weak transcription	NHLF	lung
41	chr6:166883800-166892600	Weak transcription	Aorta	Aorta
42	chr6:166883800-166895200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:166883800-166898800	Weak transcription	Fetal Intestine Small	intestine
44	chr6:166883800-166900400	Weak transcription	HUVEC	blood vessel
45	chr6:166884000-166892200	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:166884000-166892600	Weak transcription	Ovary	ovary
47	chr6:166884400-166891800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:166884400-166892200	Weak transcription	Fetal Brain Female	brain
49	chr6:166884600-166911400	Weak transcription	HMEC	breast
50	chr6:166886400-166892200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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