Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10498795	0.85[EUR][1000 genomes]
rs1543356	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2223617	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2820217	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2820218	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3000998	0.85[CHB][hapmap]
rs4077760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4131378	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4276504	1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4357137	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs4380749	0.86[EUR][1000 genomes]
rs4397225	0.86[EUR][1000 genomes]
rs4476827	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[EUR][1000 genomes]
rs4580851	0.85[EUR][1000 genomes]
rs6905927	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[EUR][1000 genomes]
rs6908101	0.80[EUR][1000 genomes]
rs6925165	0.86[EUR][1000 genomes]
rs761135	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7752696	0.86[EUR][1000 genomes]
rs9474672	0.82[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034955	chr6:53447607-53931055	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1021506	chr6:53600338-53770482	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53601600-53638000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:53618200-53630200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:53618800-53635800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:53619400-53633400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:53622800-53625000	Enhancers	Fetal Brain Male	brain
6	chr6:53624000-53625000	Enhancers	Brain Germinal Matrix	brain

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