Variant report

Variant	rs6920269
Chromosome Location	chr6:163778189-163778190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13194411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737311	0.90[ASN][1000 genomes]
rs1737314	0.81[EUR][1000 genomes]
rs1763999	0.90[ASN][1000 genomes]
rs2143070	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4709712	0.90[ASN][1000 genomes]
rs6901488	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6905064	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922650	0.90[ASN][1000 genomes]
rs735751	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9346957	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9347742	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9347743	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9365560	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9365561	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163772200-163778600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr6:163772400-163778800	Enhancers	Placenta	Placenta
3	chr6:163775000-163778400	Enhancers	Fetal Heart	heart
4	chr6:163775200-163778200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:163775200-163778400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:163775200-163778400	Enhancers	Lung	lung
7	chr6:163775800-163778400	Enhancers	Right Atrium	heart
8	chr6:163776400-163783400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:163776800-163778400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr6:163776800-163778400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr6:163777000-163778200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:163777000-163778400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:163777000-163778800	Enhancers	Brain Cingulate Gyrus	brain
14	chr6:163777000-163779000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:163777200-163778200	Enhancers	NHDF-Ad	bronchial
16	chr6:163777200-163778400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:163777200-163778400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:163777200-163778600	Enhancers	Brain Angular Gyrus	brain
19	chr6:163777400-163778400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:163777400-163778400	Enhancers	Adipose Nuclei	Adipose
21	chr6:163777400-163778400	Enhancers	HUVEC	blood vessel
22	chr6:163777400-163778600	Enhancers	Brain Anterior Caudate	brain
23	chr6:163777400-163778600	Enhancers	Brain Hippocampus Middle	brain
24	chr6:163777400-163780000	Weak transcription	Right Ventricle	heart
25	chr6:163777400-163786800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:163777400-163787400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:163777400-163790000	Weak transcription	Spleen	Spleen
28	chr6:163777400-163791400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:163777600-163778200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr6:163777600-163778400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:163777600-163778800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr6:163777600-163779400	Weak transcription	Fetal Muscle Leg	muscle
33	chr6:163777600-163781400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:163777800-163778200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:163777800-163778400	Enhancers	H1 Cell Line	embryonic stem cell
36	chr6:163778000-163778200	Enhancers	Brain Substantia Nigra	brain
37	chr6:163778000-163778400	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr6:163778000-163778600	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr6:163778000-163779400	Weak transcription	Left Ventricle	heart
40	chr6:163778000-163788600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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