Variant report

Variant	rs6920332
Chromosome Location	chr6:80310226-80310227
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80309921..80312950-chr6:80318776..80321900,3	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1485377	0.83[JPT][hapmap]
rs1504368	0.95[AFR][1000 genomes]
rs16890805	1.00[CHB][hapmap]
rs16890832	1.00[CHB][hapmap]
rs16890833	1.00[CHB][hapmap]
rs55873641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62413401	0.81[AFR][1000 genomes]
rs62413414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62413416	1.00[AFR][1000 genomes]
rs6917186	1.00[AFR][1000 genomes]
rs6934060	1.00[AFR][1000 genomes]
rs6939569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73747413	1.00[AFR][1000 genomes]
rs73750727	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv886301	chr6:80111104-80339088	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv886302	chr6:80111104-80355973	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1027388	chr6:80113449-80355973	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv830707	chr6:80134625-80325171	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1029259	chr6:80142754-80340332	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv463906	chr6:80240951-80313297	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv604052	chr6:80240951-80313297	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1018318	chr6:80241029-80465282	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv1032347	chr6:80284809-80694778	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
11	nsv886304	chr6:80294265-80355973	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80298600-80324200	Weak transcription	Right Ventricle	heart
2	chr6:80300000-80312200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:80301600-80310400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:80307200-80314600	Weak transcription	Small Intestine	intestine
5	chr6:80308000-80312200	Enhancers	Stomach Mucosa	stomach
6	chr6:80309200-80310600	Enhancers	Pancreas	Pancrea
7	chr6:80309200-80311200	Enhancers	Fetal Intestine Large	intestine
8	chr6:80309200-80311400	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr6:80309400-80310400	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr6:80309400-80311000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:80309400-80311000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr6:80309400-80311200	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr6:80309400-80312400	Enhancers	Fetal Intestine Small	intestine
14	chr6:80309400-80313200	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr6:80309600-80310400	Enhancers	Colonic Mucosa	Colon
16	chr6:80309600-80310400	Enhancers	Gastric	stomach
17	chr6:80309600-80310400	Enhancers	Left Ventricle	heart
18	chr6:80309600-80311200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:80309800-80311000	Enhancers	Brain Anterior Caudate	brain
20	chr6:80309800-80311200	Enhancers	Duodenum Mucosa	Duodenum
21	chr6:80310000-80310400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:80310000-80310400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:80310000-80310400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:80310000-80310400	Enhancers	Esophagus	oesophagus
25	chr6:80310000-80310400	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr6:80310000-80310600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:80310000-80311200	Enhancers	NH-A	brain
28	chr6:80310000-80311400	Enhancers	NHLF	lung
29	chr6:80310000-80314200	Weak transcription	Fetal Heart	heart
30	chr6:80310200-80310400	Enhancers	Brain Angular Gyrus	brain
31	chr6:80310200-80310400	Enhancers	Brain Cingulate Gyrus	brain
32	chr6:80310200-80310600	Enhancers	Psoas Muscle	Psoas
33	chr6:80310200-80310600	Flanking Active TSS	A549	lung
34	chr6:80310200-80311000	Enhancers	Hela-S3	cervix
35	chr6:80310200-80311200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:80310200-80311200	Enhancers	Muscle Satellite Cultured Cells	--
37	chr6:80310200-80311200	Enhancers	HepG2	liver
38	chr6:80310200-80311200	Enhancers	HSMM	muscle
39	chr6:80310200-80311400	Enhancers	Osteobl	bone
40	chr6:80310200-80314000	Enhancers	K562	blood

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