Variant report

Variant	rs6920509
Chromosome Location	chr6:29588230-29588231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:29587588..29589297-chr6:29589819..29592777,2	MCF-7	breast:
2	chr6:29578000..29583607-chr6:29584816..29592316,14	K562	blood:
3	chr6:29587184..29588996-chr6:29625794..29627418,2	K562	blood:

Variant related genes	Relation type
ENSG00000204655	Chromatin interaction
ENSG00000204681	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16895213	1.00[ASN][1000 genomes]
rs16895214	1.00[ASN][1000 genomes]
rs17178077	1.00[ASN][1000 genomes]
rs3025622	1.00[ASN][1000 genomes]
rs6912437	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7767894	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29566400-29595200	Weak transcription	Right Atrium	heart
2	chr6:29566800-29590000	Strong transcription	H9 Cell Line	embryonic stem cell
3	chr6:29566800-29590600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:29567000-29589800	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:29567200-29589400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:29567200-29589800	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:29567600-29592400	Strong transcription	Fetal Stomach	stomach
8	chr6:29567600-29595400	Weak transcription	A549	lung
9	chr6:29568600-29595200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:29569000-29592400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:29569200-29592200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:29569400-29592000	Strong transcription	Stomach Smooth Muscle	stomach
13	chr6:29569400-29595600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:29570800-29589600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr6:29571600-29589800	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:29572000-29590000	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr6:29572200-29588800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:29572200-29595600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr6:29572400-29592000	Strong transcription	Fetal Brain Female	brain
20	chr6:29572400-29593000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:29573000-29591000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:29574400-29595400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr6:29574800-29595000	Weak transcription	Pancreas	Pancrea
24	chr6:29575200-29588800	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr6:29575200-29590800	Weak transcription	Primary T cells from cord blood	blood
26	chr6:29575400-29591600	Weak transcription	Colonic Mucosa	Colon
27	chr6:29576400-29588400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:29576800-29589600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr6:29576800-29589800	Weak transcription	Placenta	Placenta
30	chr6:29577000-29591600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr6:29577400-29590200	Weak transcription	Fetal Intestine Small	intestine
32	chr6:29577600-29595400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:29577800-29588600	Weak transcription	HSMM	muscle
34	chr6:29578800-29589800	Weak transcription	Esophagus	oesophagus
35	chr6:29578800-29595200	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr6:29579200-29588800	Weak transcription	Brain Hippocampus Middle	brain
37	chr6:29579600-29589800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr6:29580400-29592200	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr6:29581200-29591600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:29581400-29588600	Weak transcription	Brain Angular Gyrus	brain
41	chr6:29581400-29589800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr6:29581400-29589800	Weak transcription	Dnd41	blood
43	chr6:29581800-29596000	Weak transcription	Fetal Heart	heart
44	chr6:29582000-29588800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr6:29582400-29588800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr6:29582600-29595400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr6:29583200-29588800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:29583800-29592200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:29584000-29590200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr6:29585400-29589200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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