Variant report

Variant	rs7767894
Chromosome Location	chr6:29495127-29495128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs16895213	1.00[ASN][1000 genomes]
rs16895214	1.00[ASN][1000 genomes]
rs17177794	1.00[AMR][1000 genomes]
rs17178077	1.00[ASN][1000 genomes]
rs17184185	1.00[AMR][1000 genomes]
rs17184234	1.00[AMR][1000 genomes]
rs17184248	1.00[AMR][1000 genomes]
rs3025622	1.00[ASN][1000 genomes]
rs3025656	1.00[AMR][1000 genomes]
rs3025661	1.00[AMR][1000 genomes]
rs3025662	1.00[AMR][1000 genomes]
rs3025663	1.00[AMR][1000 genomes]
rs3025664	1.00[AMR][1000 genomes]
rs3025665	1.00[AMR][1000 genomes]
rs3025666	1.00[AMR][1000 genomes]
rs3025668	1.00[AMR][1000 genomes]
rs3025670	1.00[AMR][1000 genomes]
rs3025672	1.00[AMR][1000 genomes]
rs362537	1.00[AMR][1000 genomes]
rs61730331	1.00[AMR][1000 genomes]
rs6902738	1.00[AMR][1000 genomes]
rs6907353	1.00[AMR][1000 genomes]
rs6911709	1.00[AMR][1000 genomes]
rs6911894	1.00[AMR][1000 genomes]
rs6912437	1.00[ASN][1000 genomes]
rs6912673	1.00[AMR][1000 genomes]
rs6916704	1.00[AMR][1000 genomes]
rs6920509	1.00[ASN][1000 genomes]
rs6930217	1.00[AMR][1000 genomes]
rs6935418	1.00[AMR][1000 genomes]
rs6936602	1.00[AMR][1000 genomes]
rs6936646	1.00[AMR][1000 genomes]
rs6936699	1.00[AMR][1000 genomes]
rs6936946	1.00[AMR][1000 genomes]
rs6937416	1.00[AMR][1000 genomes]
rs6937421	1.00[AMR][1000 genomes]
rs7745807	1.00[AMR][1000 genomes]
rs7751350	1.00[AMR][1000 genomes]
rs7752066	1.00[AMR][1000 genomes]
rs7763501	1.00[AMR][1000 genomes]
rs7763643	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv966616	chr6:29479346-29495253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29468600-29496200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:29493000-29496400	Weak transcription	Pancreas	Pancrea
3	chr6:29493200-29496000	Weak transcription	Liver	Liver
4	chr6:29494600-29495400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:29494600-29495600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:29494800-29495400	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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