Variant report

Variant	rs6920811
Chromosome Location	chr6:74176986-74176987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:74176803..74178965-chr6:74217784..74220386,2	K562	blood:
2	6:74000304-74012200..6:74160392-74184826	K562	blood:
3	chr6:74176292..74177973-chr6:74230124..74232828,2	K562	blood:

Variant related genes	Relation type
ENSG00000156508	Chromatin interaction
ENSG00000234882	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10943096	0.93[EUR][1000 genomes]
rs11754630	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11755449	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11756187	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11756242	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11756668	0.88[EUR][1000 genomes]
rs11757033	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11760131	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12524204	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12524548	0.81[EUR][1000 genomes]
rs12526457	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12526483	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12526844	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12527011	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12527340	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12529857	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17757139	0.86[EUR][1000 genomes]
rs2036039	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2073465	0.86[EUR][1000 genomes]
rs3806981	0.89[EUR][1000 genomes]
rs4340968	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4440422	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4706541	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4708056	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4708059	0.93[EUR][1000 genomes]
rs58462079	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62438380	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62438381	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62438385	0.83[EUR][1000 genomes]
rs62438400	0.87[EUR][1000 genomes]
rs62438403	0.86[EUR][1000 genomes]
rs62438405	0.83[EUR][1000 genomes]
rs62438406	0.82[EUR][1000 genomes]
rs62440626	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6453676	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6908789	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6925541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73452507	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7453831	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7754947	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7765670	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9800809	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv830693	chr6:74049342-74216080	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv886158	chr6:74126084-74436825	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
4	nsv1027968	chr6:74155378-74521923	Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv538305	chr6:74155378-74521923	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv1017716	chr6:74173173-74401162	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	170 gene(s)	inside rSNPs	diseases
7	esv3415648	chr6:74176971-74177328	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6920811	MTO1	cis	Whole Blood	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74172200-74189600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:74172200-74189600	Weak transcription	Stomach Mucosa	stomach
3	chr6:74172200-74197200	Weak transcription	Fetal Heart	heart
4	chr6:74172200-74229200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:74172400-74177400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:74172400-74178000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:74172400-74178200	Weak transcription	Fetal Kidney	kidney
8	chr6:74172400-74183000	Weak transcription	Aorta	Aorta
9	chr6:74172400-74183400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:74172800-74177000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:74172800-74177600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:74172800-74177800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:74172800-74178600	Weak transcription	NHLF	lung
14	chr6:74172800-74181400	Strong transcription	Fetal Stomach	stomach
15	chr6:74172800-74183000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:74172800-74183000	Weak transcription	A549	lung
17	chr6:74172800-74183200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:74173000-74183000	Weak transcription	Psoas Muscle	Psoas
19	chr6:74173000-74183200	Weak transcription	Colonic Mucosa	Colon
20	chr6:74173200-74177400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:74173200-74177600	Weak transcription	Gastric	stomach
22	chr6:74173200-74178000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:74173200-74178600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr6:74173200-74182800	Weak transcription	Right Ventricle	heart
25	chr6:74173400-74181400	Strong transcription	Fetal Intestine Small	intestine
26	chr6:74173400-74199000	Strong transcription	Fetal Thymus	thymus
27	chr6:74173600-74177800	Weak transcription	Brain Germinal Matrix	brain
28	chr6:74173600-74180000	Strong transcription	Primary B cells from peripheral blood	blood
29	chr6:74173600-74198800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr6:74173800-74177800	Weak transcription	Primary T cells from cord blood	blood
31	chr6:74173800-74181800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:74173800-74181800	Strong transcription	Fetal Muscle Leg	muscle
33	chr6:74173800-74182200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr6:74173800-74198800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr6:74173800-74206200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:74174000-74187600	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr6:74174000-74193600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:74174200-74178400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr6:74174200-74182600	Weak transcription	Small Intestine	intestine
40	chr6:74174600-74179800	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr6:74174800-74180000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr6:74174800-74180600	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr6:74175000-74179400	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr6:74175200-74179800	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr6:74175200-74198800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:74175200-74199200	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr6:74175400-74199000	Strong transcription	Stomach Smooth Muscle	stomach
48	chr6:74175600-74179000	Strong transcription	K562	blood
49	chr6:74175600-74179200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:74175600-74180800	Strong transcription	Primary T helper cells PMA-I stimulated	--

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