Variant report

Variant	rs62438406
Chromosome Location	chr6:74258353-74258354
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:74243409..74245611-chr6:74258202..74260560,2	K562	blood:
2	chr6:74257538..74259934-chr6:74264799..74266356,2	K562	blood:
3	chr6:74258106..74260053-chr6:74273843..74275790,2	K562	blood:
4	chr6:74250116..74252715-chr6:74255557..74258445,2	K562	blood:
5	chr6:74222972..74225246-chr6:74258116..74260995,4	K562	blood:
6	chr6:74229899..74231752-chr6:74257200..74259268,3	MCF-7	breast:
7	chr6:74223173..74224684-chr6:74258116..74259948,2	K562	blood:

Variant related genes	Relation type
ENSG00000156508	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10943096	0.85[EUR][1000 genomes]
rs11754630	0.88[EUR][1000 genomes]
rs11756187	0.86[EUR][1000 genomes]
rs11756242	0.85[EUR][1000 genomes]
rs11756668	0.92[EUR][1000 genomes]
rs11757033	0.93[EUR][1000 genomes]
rs11760131	0.82[EUR][1000 genomes]
rs12524204	0.82[EUR][1000 genomes]
rs12524548	0.87[EUR][1000 genomes]
rs12526457	0.81[EUR][1000 genomes]
rs12526483	0.83[EUR][1000 genomes]
rs12526844	0.86[EUR][1000 genomes]
rs12527011	0.86[EUR][1000 genomes]
rs12527340	0.86[EUR][1000 genomes]
rs12529857	0.83[EUR][1000 genomes]
rs17757139	0.89[EUR][1000 genomes]
rs2036039	0.85[EUR][1000 genomes]
rs2073465	0.90[EUR][1000 genomes]
rs3806981	0.93[EUR][1000 genomes]
rs4440422	0.86[EUR][1000 genomes]
rs4706541	0.85[EUR][1000 genomes]
rs4708056	0.82[EUR][1000 genomes]
rs4708059	0.85[EUR][1000 genomes]
rs58462079	0.85[EUR][1000 genomes]
rs62438380	0.82[EUR][1000 genomes]
rs62438381	0.85[EUR][1000 genomes]
rs62438400	0.94[EUR][1000 genomes]
rs62438403	0.95[EUR][1000 genomes]
rs62438405	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453676	0.82[EUR][1000 genomes]
rs6908789	0.85[EUR][1000 genomes]
rs6920811	0.82[EUR][1000 genomes]
rs6925541	0.83[EUR][1000 genomes]
rs72961994	0.85[EUR][1000 genomes]
rs73452507	0.85[EUR][1000 genomes]
rs7453831	0.82[EUR][1000 genomes]
rs7754947	0.85[EUR][1000 genomes]
rs7765670	0.82[EUR][1000 genomes]
rs9446929	0.81[ASN][1000 genomes]
rs9800809	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv886158	chr6:74126084-74436825	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
3	nsv1027968	chr6:74155378-74521923	Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	nsv538305	chr6:74155378-74521923	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv1017716	chr6:74173173-74401162	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	170 gene(s)	inside rSNPs	diseases
6	nsv1023250	chr6:74189642-74605976	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
7	nsv538306	chr6:74189642-74605976	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
8	esv2763576	chr6:74197638-74277249	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	160 gene(s)	inside rSNPs	diseases
9	nsv5350	chr6:74221995-74267088	Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	159 gene(s)	inside rSNPs	diseases
10	nsv886159	chr6:74223153-74275405	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	159 gene(s)	inside rSNPs	diseases
11	nsv463153	chr6:74229258-74290291	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
12	nsv603693	chr6:74229258-74290291	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
13	nsv527357	chr6:74253266-74325403	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74257800-74259200	Enhancers	HepG2	liver
2	chr6:74258000-74259600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:74258000-74260000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:74258000-74260200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:74258200-74260200	Enhancers	Liver	Liver

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