Variant report

Variant	rs6920964
Chromosome Location	chr6:56221236-56221237
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11751569	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757910	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757941	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110833	0.88[CHB][hapmap];0.87[JPT][hapmap];0.97[ASN][1000 genomes]
rs13218268	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220153	0.88[CHB][hapmap];0.87[JPT][hapmap];0.97[ASN][1000 genomes]
rs16887812	0.88[CHB][hapmap];0.87[JPT][hapmap];0.97[ASN][1000 genomes]
rs2206533	0.81[CHB][hapmap]
rs2294697	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35615447	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62412411	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56218400-56229200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:56219400-56223400	Enhancers	Fetal Lung	lung
3	chr6:56220400-56222000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:56220600-56221400	Enhancers	Brain Cingulate Gyrus	brain
5	chr6:56220600-56221400	Enhancers	Brain Hippocampus Middle	brain
6	chr6:56220600-56221600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:56220600-56222800	Enhancers	Rectal Smooth Muscle	rectum
8	chr6:56220600-56223400	Enhancers	Colon Smooth Muscle	Colon
9	chr6:56220800-56221800	Enhancers	Fetal Stomach	stomach
10	chr6:56220800-56222600	Enhancers	Stomach Smooth Muscle	stomach
11	chr6:56220800-56223000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:56220800-56223000	Enhancers	NHDF-Ad	bronchial
13	chr6:56220800-56223200	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr6:56220800-56223400	Enhancers	Osteobl	bone
15	chr6:56221000-56221400	Enhancers	Brain Substantia Nigra	brain
16	chr6:56221000-56221600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:56221000-56221600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:56221000-56221600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:56221000-56221600	Enhancers	Ovary	ovary
20	chr6:56221000-56221800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:56221000-56221800	Enhancers	HUVEC	blood vessel
22	chr6:56221000-56222600	Enhancers	Fetal Heart	heart
23	chr6:56221000-56223200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:56221000-56223200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:56221000-56223200	Enhancers	NH-A	brain
26	chr6:56221000-56223400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr6:56221000-56223400	Enhancers	HSMM	muscle
28	chr6:56221000-56224200	Enhancers	HMEC	breast
29	chr6:56221000-56224200	Enhancers	NHEK	skin
30	chr6:56221200-56221400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr6:56221200-56221400	Enhancers	Right Ventricle	heart
32	chr6:56221200-56221600	Enhancers	Brain Germinal Matrix	brain
33	chr6:56221200-56221600	Enhancers	NHLF	lung
34	chr6:56221200-56223000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:56221200-56223200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:56221200-56223200	Enhancers	HSMMtube	muscle
37	chr6:56221200-56224600	Weak transcription	Brain Inferior Temporal Lobe	brain

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