Variant report

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11751569	0.93[CHB][hapmap]
rs11757910	0.93[CHB][hapmap]
rs11757941	0.93[CHB][hapmap]
rs11969365	0.81[LWK][hapmap]
rs12110833	0.92[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13218268	0.93[CHB][hapmap]
rs13220153	0.96[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16887812	0.96[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2294697	0.93[CHB][hapmap];0.87[CHD][hapmap]
rs2397220	0.88[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs6459157	0.81[CHB][hapmap]
rs6915291	0.88[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs6920964	0.81[CHB][hapmap]
rs7764788	0.81[CHB][hapmap]
rs7770594	0.81[CHB][hapmap]
rs9464383	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2206533	FBXO9	cis	parietal	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56209800-56215200	Enhancers	NHDF-Ad	bronchial
2	chr6:56210000-56215000	Enhancers	Osteobl	bone
3	chr6:56210400-56215000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:56211000-56214200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:56211000-56215200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:56211400-56214800	Enhancers	NHEK	skin
7	chr6:56211600-56214000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:56211600-56214000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:56211600-56215000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:56211600-56215000	Enhancers	HSMM	muscle
11	chr6:56211600-56215000	Enhancers	NH-A	brain
12	chr6:56211600-56215200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:56211600-56215200	Enhancers	NHLF	lung
14	chr6:56211800-56214800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:56211800-56214800	Enhancers	HMEC	breast
16	chr6:56212000-56213000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:56212000-56214800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:56212000-56221000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:56212200-56214200	Weak transcription	HSMMtube	muscle
20	chr6:56212400-56213600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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