Variant report

Variant	rs7764788
Chromosome Location	chr6:56240313-56240314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:56238499..56241201-chr6:56301046..56303726,2	MCF-7	breast:
2	chr6:56234551..56238270-chr6:56238885..56242928,5	MCF-7	breast:
3	chr6:56239249..56241826-chr6:56241838..56243867,3	MCF-7	breast:
4	chr6:56235564..56237244-chr6:56239009..56240614,2	K562	blood:
5	chr6:56239053..56241377-chr6:56244468..56246401,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11751569	0.93[CHB][hapmap]
rs11757910	0.88[CHB][hapmap]
rs11757941	0.88[CHB][hapmap]
rs12110833	0.88[CHB][hapmap]
rs13218268	0.87[CHB][hapmap]
rs13220153	0.88[CHB][hapmap]
rs16887812	0.88[CHB][hapmap]
rs2206531	0.83[CHB][hapmap]
rs2206533	0.81[CHB][hapmap]
rs2294697	0.87[CHB][hapmap]
rs4140500	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4715616	0.83[CHB][hapmap]
rs4715617	0.83[CHB][hapmap]
rs6459157	1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs7770594	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9296842	0.83[CHB][hapmap]
rs9370525	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs9382623	0.83[CHB][hapmap]
rs9382624	0.88[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs9464383	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs994376	0.83[CHB][hapmap]
rs999231	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56236600-56242800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:56237600-56242200	Weak transcription	HepG2	liver
3	chr6:56238800-56241000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:56239000-56241200	Enhancers	Fetal Stomach	stomach
5	chr6:56239400-56240400	Enhancers	Fetal Muscle Trunk	muscle
6	chr6:56239400-56240600	Enhancers	Psoas Muscle	Psoas
7	chr6:56239600-56240600	Flanking Active TSS	Stomach Smooth Muscle	stomach
8	chr6:56239600-56241200	Enhancers	Fetal Muscle Leg	muscle
9	chr6:56239600-56241400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:56239800-56240400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:56239800-56240400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:56239800-56240400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:56239800-56240400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:56239800-56240400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:56239800-56240400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:56239800-56240400	Enhancers	Fetal Intestine Large	intestine
17	chr6:56239800-56240400	Enhancers	Ovary	ovary
18	chr6:56239800-56240400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr6:56239800-56240400	Enhancers	HSMM	muscle
20	chr6:56239800-56240400	Enhancers	NHLF	lung
21	chr6:56239800-56240400	Flanking Active TSS	Osteobl	bone
22	chr6:56239800-56240600	Flanking Active TSS	Colon Smooth Muscle	Colon
23	chr6:56239800-56240600	Enhancers	Right Ventricle	heart
24	chr6:56239800-56241000	Enhancers	Hela-S3	cervix
25	chr6:56239800-56241200	Enhancers	Fetal Heart	heart
26	chr6:56239800-56241200	Enhancers	NHEK	skin
27	chr6:56239800-56241400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:56240000-56240400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:56240000-56240400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:56240000-56240400	Enhancers	Placenta	Placenta
31	chr6:56240000-56240400	Enhancers	Lung	lung
32	chr6:56240000-56240400	Enhancers	Pancreas	Pancrea
33	chr6:56240000-56240400	Flanking Active TSS	Rectal Smooth Muscle	rectum
34	chr6:56240000-56240400	Enhancers	HSMMtube	muscle
35	chr6:56240000-56240600	Enhancers	Aorta	Aorta
36	chr6:56240000-56240600	Enhancers	Fetal Lung	lung
37	chr6:56240000-56240600	Enhancers	Left Ventricle	heart
38	chr6:56240000-56240600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
39	chr6:56240000-56243000	Weak transcription	HMEC	breast
40	chr6:56240200-56240400	Enhancers	Right Atrium	heart
41	chr6:56240200-56240600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:56240200-56240600	Enhancers	Adipose Nuclei	Adipose
43	chr6:56240200-56240600	Enhancers	Duodenum Mucosa	Duodenum
44	chr6:56240200-56240600	Enhancers	Fetal Thymus	thymus
45	chr6:56240200-56240600	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr6:56240200-56240600	Enhancers	NHDF-Ad	bronchial
47	chr6:56240200-56240800	Enhancers	Duodenum Smooth Muscle	Duodenum

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