Variant report

Variant	rs6921689
Chromosome Location	chr6:81024835-81024836
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1341279	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3792990	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3812114	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3812117	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3812118	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs600843	0.82[EUR][1000 genomes]
rs7766674	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs947223	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81001200-81025800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:81005200-81056200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:81013800-81028800	Weak transcription	HSMM	muscle
4	chr6:81015000-81026400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:81015600-81036400	Weak transcription	Ovary	ovary
6	chr6:81015600-81037400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:81020000-81025400	Weak transcription	Aorta	Aorta
8	chr6:81024000-81025000	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr6:81024200-81025000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:81024600-81025200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:81024600-81026800	Weak transcription	Fetal Stomach	stomach
12	chr6:81024800-81025000	Enhancers	Lung	lung
13	chr6:81024800-81025400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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