Variant report

Variant	rs6922797
Chromosome Location	chr6:13184396-13184397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13184097..13187942-chr6:13192836..13196557,4	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11757278	0.91[YRI][hapmap]
rs16869298	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1887846	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.94[ASN][1000 genomes]
rs28451621	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921265	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6934799	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935948	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937019	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752718	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7771038	1.00[JPT][hapmap]
rs9395520	0.91[YRI][hapmap]
rs9473641	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9473643	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	nsv883450	chr6:13166341-13196011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13164800-13184400	Weak transcription	Pancreas	Pancrea
2	chr6:13172800-13191800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:13176400-13191200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:13178400-13184400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:13178800-13187200	Weak transcription	Spleen	Spleen
6	chr6:13178800-13191400	Weak transcription	Left Ventricle	heart
7	chr6:13178800-13217400	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:13179200-13184800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:13181400-13184600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:13181600-13190600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:13182000-13184800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:13182000-13184800	Enhancers	Brain Anterior Caudate	brain
13	chr6:13182000-13184800	Weak transcription	Stomach Mucosa	stomach
14	chr6:13182000-13187200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:13182000-13188000	Weak transcription	Fetal Stomach	stomach
16	chr6:13182000-13205400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:13182000-13211800	Weak transcription	Fetal Brain Female	brain
18	chr6:13182000-13212000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:13182000-13230000	Weak transcription	Brain Angular Gyrus	brain
20	chr6:13182200-13192800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:13182800-13188200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr6:13182800-13188600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr6:13183000-13195200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:13183000-13207000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr6:13183600-13184400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:13183800-13185400	Strong transcription	Lung	lung
27	chr6:13183800-13187000	Enhancers	Fetal Heart	heart
28	chr6:13184000-13185400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:13184000-13188600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:13184000-13190600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:13184000-13220800	Weak transcription	Brain Germinal Matrix	brain
32	chr6:13184200-13185200	Genic enhancers	Right Ventricle	heart
33	chr6:13184200-13185400	Strong transcription	Aorta	Aorta
34	chr6:13184200-13197000	Weak transcription	Stomach Smooth Muscle	stomach

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