Variant report

Variant	rs6923286
Chromosome Location	chr6:118537660-118537661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1034247	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13199882	1.00[JPT][hapmap]
rs1889465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1889466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2050312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2050313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2065707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2184365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2356078	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs281871	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs283043	1.00[JPT][hapmap]
rs283092	1.00[JPT][hapmap]
rs2883848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs401172	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4245500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs429084	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs454842	1.00[JPT][hapmap]
rs456384	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs457162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs458588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs465226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4945614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4945615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4945617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4946328	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6911094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6917963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6921633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6921657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6933344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7768436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs928598	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9481772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9489324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9489325	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs980916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv428153	chr6:118430517-118586974	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118533600-118541600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:118536800-118538000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:118536800-118542000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:118537000-118539600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:118537400-118541600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:118537600-118538200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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