Variant report

Variant	rs454842
Chromosome Location	chr6:118611118-118611119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1034247	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs13199882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs169465	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap]
rs1889465	0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1889466	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1931976	0.81[ASN][1000 genomes]
rs2050312	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2050313	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs205917	0.81[ASN][1000 genomes]
rs205920	0.81[ASN][1000 genomes]
rs205923	0.81[ASN][1000 genomes]
rs2065707	1.00[JPT][hapmap]
rs2095406	0.81[ASN][1000 genomes]
rs2105021	0.81[ASN][1000 genomes]
rs2184365	0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2356078	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.83[MKK][hapmap];1.00[ASN][1000 genomes]
rs281859	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs281862	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs281863	1.00[CHB][hapmap]
rs281865	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs281871	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs283043	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs283058	1.00[CHB][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap]
rs283059	0.83[EUR][1000 genomes]
rs283060	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs283063	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs283064	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap]
rs283090	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap]
rs283092	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.90[TSI][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs283095	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2883847	0.81[ASN][1000 genomes]
rs2883848	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs383574	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs401172	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs406031	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs412995	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4245500	1.00[JPT][hapmap]
rs429084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs430538	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap]
rs444666	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.81[TSI][hapmap]
rs455227	0.81[ASN][1000 genomes]
rs455338	0.81[ASN][1000 genomes]
rs456384	0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs457162	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs457210	0.81[ASN][1000 genomes]
rs458588	0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs460399	0.81[ASN][1000 genomes]
rs465226	0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4945614	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4945615	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4945617	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4946328	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6911094	0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6917963	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6921633	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6921657	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6923286	1.00[JPT][hapmap]
rs6933344	0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7745369	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs7748215	0.81[ASN][1000 genomes]
rs7768436	0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs928598	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs928599	0.91[ASN][1000 genomes]
rs9320645	0.81[ASN][1000 genomes]
rs9481771	0.81[ASN][1000 genomes]
rs9481772	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9489324	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9489325	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs980916	1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118606600-118613400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:118607600-118614000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:118607600-118616000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:118607600-118617000	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:118608200-118613400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:118608400-118613400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:118608400-118613400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:118608600-118612800	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:118609000-118616400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:118609400-118612600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:118609800-118616600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:118610000-118614800	Weak transcription	Aorta	Aorta
13	chr6:118610200-118617200	Weak transcription	Left Ventricle	heart
14	chr6:118610400-118611200	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links