Variant report

Variant	rs406031
Chromosome Location	chr6:118609790-118609791
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1034247	1.00[CHB][hapmap]
rs13199882	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs157487	0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs166881	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs169465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2050312	1.00[CHB][hapmap]
rs2356078	1.00[CHB][hapmap]
rs281859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs281862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs281863	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs281865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs281870	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs281871	1.00[CHB][hapmap]
rs283041	0.81[ASN][1000 genomes]
rs283043	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs283058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs283060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs283063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs283064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs283065	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs283089	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs283090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs283092	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs401172	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs429084	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs430538	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs444666	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs454842	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs4946332	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7745369	1.00[CEU][hapmap]
rs928598	1.00[CEU][hapmap]
rs9489325	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118603400-118610000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr6:118606200-118609800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:118606600-118613400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:118607200-118609800	Weak transcription	NHLF	lung
5	chr6:118607600-118614000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:118607600-118616000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:118607600-118617000	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:118608200-118613400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:118608400-118610200	Enhancers	Left Ventricle	heart
10	chr6:118608400-118613400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:118608400-118613400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:118608600-118610400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:118608600-118612800	Weak transcription	Colon Smooth Muscle	Colon
14	chr6:118608800-118610000	Enhancers	Aorta	Aorta
15	chr6:118608800-118610200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr6:118608800-118610400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:118609000-118609800	Enhancers	Fetal Heart	heart
18	chr6:118609000-118616400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:118609200-118610000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:118609400-118610000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr6:118609400-118610000	Enhancers	H1 Cell Line	embryonic stem cell
22	chr6:118609400-118610000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:118609400-118610600	Enhancers	HUVEC	blood vessel
24	chr6:118609400-118612600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:118609600-118610400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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