Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs157487	0.86[ASN][1000 genomes]
rs169465	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs281859	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs281862	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs281863	0.86[ASN][1000 genomes]
rs281865	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs281870	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs283041	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283043	0.80[EUR][1000 genomes]
rs283058	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283060	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs283089	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs283090	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs406031	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs430538	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs444666	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4946332	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Thiazide-induced adverse metabolic effects in hypertensive patients	23400010	GWAS catalog

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118614400-118620200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:118616600-118620000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:118616800-118620000	Weak transcription	Fetal Stomach	stomach
4	chr6:118617200-118620200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:118617600-118619000	Weak transcription	Left Ventricle	heart
6	chr6:118617600-118619000	Weak transcription	Psoas Muscle	Psoas
7	chr6:118617600-118619000	Weak transcription	Right Atrium	heart
8	chr6:118618000-118619000	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:118618000-118620000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:118618600-118619200	Enhancers	Aorta	Aorta
11	chr6:118618600-118619600	Weak transcription	Fetal Heart	heart
12	chr6:118618600-118626800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:118618800-118619400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:118618800-118621200	Enhancers	Rectal Smooth Muscle	rectum

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