Variant report

Variant	rs157487
Chromosome Location	chr6:118569726-118569727
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs166881	0.86[ASN][1000 genomes]
rs169465	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs281859	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs281862	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs281863	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs281865	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs281870	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs283041	0.86[ASN][1000 genomes]
rs283058	0.86[ASN][1000 genomes]
rs283060	0.86[ASN][1000 genomes]
rs283063	0.86[ASN][1000 genomes]
rs283064	0.86[ASN][1000 genomes]
rs283065	0.86[ASN][1000 genomes]
rs283089	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs283090	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs406031	0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs430538	1.00[ASN][1000 genomes]
rs444666	1.00[ASN][1000 genomes]
rs4946332	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv428153	chr6:118430517-118586974	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118564800-118576400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118566800-118570000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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